1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aataagaaagggattctagcccccctccaatccccttcggttttgtggctcccaaactagcactaaaggttccaaaataacgccgatctatgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGGCGCGTTCAACCGATGATTTCAATGGCGCTCAGCTAAAGGCTGTTTGCG
species | Zea mays |
transcript | GRMZM2G027282_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|211381567|gb|FL475794.1|FL475794
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|20802484|gb|BQ293534.1|BQ293534
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|211086754|gb|FL006906.1|FL006906
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|22552518|gb|BU102357.1|BU102357
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|32851366|gb|CD991047.1|CD991047
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|37400681|gb|CF637697.1|CF637697
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|5917528|gb|AW054331.1|AW054331
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCCCTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|31357355|gb|CD441712.1|CD441712
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|31356703|gb|CD441060.1|CD441060
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|109637342|gb|EC590887.1|EC590887
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAGGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGGAATGTGAATCCAGATGTCAACTTTGAAGAGTTEST: gi|78024534|gb|DV492921.1|DV492921
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATG-AATGTGAATCCAGATGTCAACTTTGAAGAGTT
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|20336842|gb|BQ172472.1|BQ172472
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|88758537|gb|DY542906.1|DY542906
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|5456459|gb|AI834149.1|AI834149
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|78543926|gb|DV621424.1|DV621424
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|78544181|gb|DV621679.1|DV621679
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|6827952|gb|AW331595.1|AW331595
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|32851382|gb|CD991063.1|CD991063
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|33097544|gb|CF057504.1|CF057504
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGTAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|211086756|gb|FL006908.1|FL006908
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGEST: gi|5124040|gb|AI745881.1|AI745881
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|120480733|gb|EH210980.1|EH210980
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|4885759|gb|AI676879.1|AI676879
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|6563657|gb|AW231384.1|AW231384
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|37401285|gb|CF638005.1|CF638005
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|17970176|gb|BM276941.1|BM276941
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|31355810|gb|CD440167.1|CD440167
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|83278765|gb|DV942773.1|DV942773
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|6564179|gb|AW231801.1|AW231801
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: GAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGEST: gi|20208457|gb|BQ134546.1|BQ134546
genomic: GAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
EST: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAG ATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
genomic: AGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgct ... tgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTG
tggctcccaaactagcactaaaggttccaaaataacgccgatctatgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGGCGCGTTCAACCGATGATTTCAATGGCGCTCAGCTAAAGGCTGTTTGCG
aaataac putative branch site (score: 2)
aaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataagaaagggattctagcccccctccaatccccttcggttttgtggctcccaaactagcactaaaggttccaaaataacgccgatctatgttgtgtagATCCACTCGAGGAAAATGAATGTGAATCCAGATGTCAACTTTGAAGAGTTGGCGCGTTCAACCGATGATTTCAATGGCGCTCAGCTAAAGGCTGTTTGCG
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