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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgttttcttatttggaacgacttttgcatgttgcaaccattttatgaagttttatgagtgtggctagcttattatcgctacagGAAACCTGTTTATGTTATTGGGACCGAACACTGTAAATGGAAGTTTTCGGCTTTTCACAAGACTCTACGGGAGCGAGGGGTTGTTCGCCCGTTCACTGGA

Basic information

species Zea mays
transcript GRMZM2G026900_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026900_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g33230.1 (Oryza sativa), 3'ss of exon 8
gtaagctgttttcttatttggaacgactttt-gcatgttgcaaccatttt-atgaagttttatgagtgtggctagcttattatcgctacagGAAACCTGTTTATGTTATTGGGACCGAACACTGTAAATGGAAGTTTTCGGCTTTTCACAAGACTCTACGGGAGCGAGGGGTTGTTCGCCCGTTCACTGGA
|||||||| | |   | ||      | ||   ||| | | | ||| |||| |||   ||  |||| |      |  | |     |  ||||||| |||||||| || |||||||| ||  | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || || |||||||||
gtaagctgatattaaaattcacgtaatttccagcaagctcctaccttttttatgggtttgcatgacttgcttcacatcacacgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCTTTTCACAAGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929458|gb|CF034270.1|CF034270
EST:     GTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGG                         GAAACCTGTTTATGTTATTGGGACCGAACACTGTAAATGGAAGTTTTCGGC
genomic: GTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGGgtaagctgtt ... atcgctacagGAAACCTGTTTATGTTATTGGGACCGAACACTGTAAATGGAAGTTTTCGGC
EST: gi|211458184|gb|FL467236.1|FL467236
EST:     GTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGG                         GAAACCTGTTTATGTTATTGGGACCGAACACTGTAAATGGAAGTTTTCGGC
genomic: GTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGGgtaagctgtt ... atcgctacagGAAACCTGTTTATGTTATTGGGACCGAACACTGTAAATGGAAGTTTTCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcaaccattttatgaagttttatgagtgtggctagcttattatcgctacagGAAACCTGTTTATGTTATTGGGACCGAACACTGTAAATGGAAGTTTTCGGCTTTTCACAAGACTCTACGGGAGCGAGGGGTTGTTCGCCCGTTCACTGGA
          attttatgaagtttta  TA-rich tract