1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taattcaacttcttttatttctattttattcaactttctggtacgggcattctgaaggtttgccaaacgtttctcatgctttgtaactttctcactgcagGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCACTGATGCATCAGGCTCGATGGTCGTGTATGCTCCAGTGGACATCCCGGCGA
species | Zea mays |
transcript | GRMZM2G026643_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCACTEST: gi|18660024|gb|BM500647.1|BM500647
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCACT
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATEST: gi|88852796|gb|DY543020.1|DY543020
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCAT
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCAEST: gi|74244866|gb|DT652780.1|DT652780
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCA
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GEST: gi|74244866|gb|DT652780.1|DT652780
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcag-
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GEST: gi|74244866|gb|DT652780.1|DT652780
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcag-
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GEST: gi|211462300|gb|FL096434.1|FL096434
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcag-
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCAEST: gi|76929403|gb|DV172000.1|DV172000
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCA
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCNAG-AGACTTGCEST: gi|74245648|gb|DT653562.1|DT653562
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCC-AGGAGACTTGC
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCAEST: gi|71437534|gb|DR818584.1|DR818584
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCA
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCAEST: gi|71299494|gb|DR785758.1|DR785758
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCA
EST: GGGAACTCGGTGTCCCTCCTCAGAGCCA GEST: gi|71299494|gb|DR785758.1|DR785758
genomic: GGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcag-
EST: GGGAACTCGGTGTCCCTCCTCAGAGCCA GEST: gi|71299494|gb|DR785758.1|DR785758
genomic: GGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcag-
EST: GGGAACTCGGTGTCCCTCCTCAGAGCCA GEST: gi|88852725|gb|DY542949.1|DY542949
genomic: GGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcag-
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCAEST: gi|211462299|gb|FL096433.1|FL096433
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCA
EST: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCC-TCCTCAGAGCCA GTGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACT
genomic: CATCGCCAAGGGGCAGGAGCACGGGAACTCGGTGTCCCTCCTCAGAGCCAgtgtgagtac ... ctcactgcagG--CCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACT
ggcattctgaaggtttgccaaacgtttctcatgctttgtaactttctcactgcagGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCACTGATGCATCAGGCTCGATGGTCGTGTATGCTCCAGTGGACATCCCGGCGA
ttctcac putative branch site (score: 2)
ctttctcact CT-rich tract
tttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattcaacttcttttatttctattttattcaactttctggtacgggcattctgaaggtttgccaaacgtttctcatgctttgtaactttctcactgcagGCCATGAGTGCCAACCAGAGCAGCATGCTGATCCTCCAGGAGACTTGCACTGATGCATCAGGCTCGATGGTCGTGTATGCTCCAGTGGACATCCCGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - -ctggtac
- - - - - - - - - - - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttg