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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccttatggcttgttgctaagtagtacttattgtggcatgcttcaagcatctatttgttttcccttctcttatcaccaagacaagaaaattattttttctgtaaatatagGTCTTCCTTGGCCAAAGCGGAGGCCTTGACTGTGAGGGAAATGAACTGCCACGATTGGTTTATGTTTCTAGAGAGAAACGACCAGGCTATAACCATCATA

Basic information

species Zea mays
transcript GRMZM2G025231_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025231_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 3'ss of exon 8
gtaagcctta-tggcttgt--tgctaagtagtacttattgtggcatgcttcaagcatctatttgttttcccttctcttatcaccaagacaagaaaattatt-ttttctgtaaatatagGTCTTCCTTGGCCAAAGCGGAGGCCTTGACTGTGAGGGAAATGAACTGCCACGATTGGTTTATGTTTCTAGAGAGAAACGACCAGGCTATAACCATCATA
||| |      ||  ||||  || |    ||||  |||  ||||||  || | | |||   |  ||| |  ||||   || |  | || ||  || |||    |||||  |   ||||||||||||||||||||| || |||| ||||   || || ||||| || || |||||||| |||||||| ||||| ||| | ||||||||||||||||| |
gtatgttcgggtgatttgtgatggtgcacagtatatatgctggcat-tttgatggatcccctc-tttcctattcttgaattatgatgataaagaagttaaaactttctcaatgaatagGTCTTCCTTGGCCAAAGTGGCGGCCATGACATCGAAGGTAATGAGCTACCTCGATTGGTGTATGTTTCAAGAGAAAAAAGGCCAGGCTATAACCATCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211308258|gb|FL341177.1|FL341177
EST:     GAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAG                         GTCTTCCTTGGCCAAAGCGGAGGCCTTGACTGTGAGGGAAATGAACTGCCA
genomic: GAACCCCCTGGCCTGGAAACAATGTTCGTGATCATCCTGGAATGATTCAGgtaagcctta ... gtaaatatagGTCTTCCTTGGCCAAAGCGGAGGCCTTGACTGTGAGGGAAATGAACTGCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcccttctcttatcaccaagacaagaaaattattttttctgtaaatatagGTCTTCCTTGGCCAAAGCGGAGGCCTTGACTGTGAGGGAAATGAACTGCCACGATTGGTTTATGTTTCTAGAGAGAAACGACCAGGCTATAACCATCATA
                                     ttttttctgt  CT-rich tract
                         acaagaaaattatttt  TA-rich tract