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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttacagtttccctccagtcagcccatgtgcgttgagttgctgacacagaacatggtttccagatcactcagttcacatgaattaaataatttggtataagttttactgtaactccaacggtgattaatgacgtcttaattaatttgttcttatgccatagGAGGGTCATGGAAATTCATCGCTCAGCCATGGCAATGGAAGTGAAATTGGACGCTATCTTGGTTGGGCTATGGCAATAATTTATATGGGTGGGCGCCTTC

Basic information

species Zea mays
transcript GRMZM2G024733_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024733_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g16170.4 (Oryza sativa), 3'ss of exon 8
gtaagcttacagtttccctccagtcagcccatgtgcgttgagttgctgacacagaacatggtttccagatcactcagttcacatgaattaaataatttggtataagttttactgtaactccaacggtgattaatgacgtcttaattaatttgttcttatgccatagGAGGGTCATGGAAATTCATCGCTCAGCCATGGCAATGGAAGTGAAATTGGACGCTATCTTGGTTGGGCTATGGCAATAATTTATATGGGTGGGCGCCTTC
                                                                         | || || ||  | |  |   |||| |||| | ||||    ||| | ||| | ||   ||    |  | |   | | |  |||| |  ||||||| |  |||| | |||||||  ||||| |||||| |||||||| ||||||| |||  |||||||||||||||||  |||| ||||||||||| || ||||
------------------------------------------------------------------------gtaagctc-cagcagtacatctatttagtatgatttttttcataattgcaa-gttg--caacagtggttgatacattataatcttctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtaactccaacggtgattaatgacgtcttaattaatttgttcttatgccatagGAGGGTCATGGAAATTCATCGCTCAGCCATGGCAATGGAAGTGAAATTGGACGCTATCTTGGTTGGGCTATGGCAATAATTTATATGGGTGGGCGCCTTC
                               aattaat  putative branch site (score: 3)
                                     tttgttctt  CT-rich tract
                           tcttaattaatttgtt  TA-rich tract