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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctactactcactgttttaccaactatatattgagttttcaggctttgttcaacatgtcacagaatattgtacatctactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAGAAATACAAACTCCTACAGCGTGAGACCAGCCGAGATCGAAACAGTCAA

Basic information

species Zea mays
transcript GRMZM2G024615_T05
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131648|gb|FL461409.1|FL461409
EST:     TCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG                         CTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
genomic: TCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: gi|37381562|gb|CF627675.1|CF627675
EST:     TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG                         CGTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAACAGCA
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: gi|211034181|gb|FL478457.1|FL478457
EST:     TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG                         CTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: gi|211034183|gb|FL478459.1|FL478459
EST:     TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG                         CTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: gi|13150595|gb|BG320917.1|BG320917
EST:     TGCTTCA-TTTGCTATCTACAG-TTTTTCCATATCCTTTTGATGGCGATG                         CTTTGTGGCCTAACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: gi|40287149|gb|CK327541.1|CK327541
EST:     TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG                         CGTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAACAGCA
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttttcaggctttgttcaacatgtcacagaatattgtacatctactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAGAAATACAAACTCCTACAGCGTGAGACCAGCCGAGATCGAAACAGTCAA
                                           tctactct  CT-rich tract
                                aatattgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacctactactcactgttttaccaactatatattgagttttcaggctttgttcaacatgtcacagaatattgtacatctactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAGAAATACAAACTCCTACAGCGTGAGACCAGCCGAGATCGAAACAGTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC