1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacctactactcactgttttaccaactatatattgagttttcaggctttgttcaacatgtcacagaatattgtacatctactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAGAAATACAAACTCCTACAGCGTGAGACCAGCCGAGATCGAAACAGTCAA
species | Zea mays |
transcript | GRMZM2G024615_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG CTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAEST: gi|37381562|gb|CF627675.1|CF627675
genomic: TCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG CGTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAACAGCAEST: gi|211034181|gb|FL478457.1|FL478457
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG CTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAEST: gi|211034183|gb|FL478459.1|FL478459
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG CTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAEST: gi|13150595|gb|BG320917.1|BG320917
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: TGCTTCA-TTTGCTATCTACAG-TTTTTCCATATCCTTTTGATGGCGATG CTTTGTGGCCTAACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAEST: gi|40287149|gb|CK327541.1|CK327541
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
EST: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATG CGTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAACAGCA
genomic: TGCTTCATTTTGCTATCTACAGTTTTTTCCATATCCTTTTGATGGCGATGgtacctacta ... tactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCA
tgagttttcaggctttgttcaacatgtcacagaatattgtacatctactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAGAAATACAAACTCCTACAGCGTGAGACCAGCCGAGATCGAAACAGTCAA
tctactct CT-rich tract
aatattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctactactcactgttttaccaactatatattgagttttcaggctttgttcaacatgtcacagaatattgtacatctactctgcagCTTTGTGGCCTCACGCATACACTGTCCAGTTAGCCGAGGAAGGGAGCAGCAGAAATACAAACTCCTACAGCGTGAGACCAGCCGAGATCGAAACAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC