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gtattcatctatgactaaaaccatgttaacattaccgtaatagtattattgtaacacatccaaaatcttgctttgcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGTGGAAGAGCTTGGTGCTGATGAAAGCTCACTGTTGAATTGTGTCCCAAAA
species | Zea mays |
transcript | GRMZM2G023289_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCTGEST: gi|211538908|gb|FL379332.1|FL379332
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTG
EST: CTTCGAAGCAATAAAAAAGCTACTGGAC-TCCCCAAAGNNTTACATTCTG T-ATGATGGCGCTCCATGGTGTTGCTGGAGCTEST: gi|116816329|gb|EC859054.1|EC859054
genomic: CTTCGAAGCAATAAAAAAGCTACTG-ACCTCCCCAAAGT-TTACATTCTGgtattcatct ... gcacttacagTTATGATG-CGCTCCATGGTGTTGCTGGAGCT
EST: TTCGAAGC-AT-AAAAAGCTA-TGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGTEST: gi|67021929|gb|CO450678.1|CO450678
genomic: TTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
EST: ACTTCGAA-CAATAAAAAAGCTACTNGACCTCCCCAA-GTTTACATTCTG TTATGATGCGCTTCATGGTGTTGCTGGAGCTTATGCCAAAEST: gi|211503690|gb|FL022245.1|FL022245
genomic: ACTTCGAAGCAATAAAAAAGCTACT-GACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAA
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGEST: gi|31354050|gb|CD438407.1|CD438407
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGG
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGTEST: gi|31351485|gb|CD435842.1|CD435842
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGTEST: gi|149060809|gb|EE157261.2|EE157261
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTT
genomic: GACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGgtattcatct ... gcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTT
cattaccgtaatagtattattgtaacacatccaaaatcttgctttgcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGTGGAAGAGCTTGGTGCTGATGAAAGCTCACTGTTGAATTGTGTCCCAAAA
ttgtaac putative branch site (score: 2)
taatagtattattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcatctatgactaaaaccatgttaacattaccgtaatagtattattgtaacacatccaaaatcttgctttgcacttacagTTATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGTGGAAGAGCTTGGTGCTGATGAAAGCTCACTGTTGAATTGTGTCCCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA