1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttctgcttgtttggtgatgtcaagtataaattagttagcccagatttgtaatacctgatttcttgtttcatgtcttctcctggcttgaattgtgccgtcaagtagtgtccctgggctaaatgtaacatttatgtttatgccaatgtctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGC
species | Zea mays |
transcript | GRMZM2G022777_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCEST: gi|60336952|gb|DN203925.1|DN203925
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGC
EST: CAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|31355560|gb|CD439917.1|CD439917
genomic: CAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|76933170|gb|DV173349.1|DV173349
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|7216903|gb|AW563025.1|AW563025
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|78109695|gb|DV528111.1|DV528111
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|7137663|gb|AW499208.1|AW499208
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|76280583|gb|DV020151.1|DV020151
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|32837432|gb|CD977110.1|CD977110
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAGGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTEST: gi|32849820|gb|CD989501.1|CD989501
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGT
EST: GCAGTGAGCATGAGGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTEST: gi|71297616|gb|DR784759.1|DR784759
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGT
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|67012372|gb|CO441121.1|CO441121
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAGGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|78121929|gb|DV540313.1|DV540313
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTNGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTAEST: gi|78106806|gb|DV525224.1|DV525224
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGAEST: gi|9733829|gb|BE512581.1|BE512581
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGA
EST: GCAGTAAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGCGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACEST: gi|149035101|gb|EE155087.2|EE155087
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATG-GTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTAC
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAEST: gi|148963079|gb|EE014036.2|EE014036
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACA
EST: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTEST: gi|32838514|gb|CD978192.1|CD978192
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCT
EST: GCAGTGAGCATGAGGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAG ATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGT
genomic: GCAGTGAGCATGAAGCTAGTCGTCGCTTGAAGACTGAGCTACTTATTCAGgtttctgctt ... tctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGT
agtagtgtccctgggctaaatgtaacatttatgtttatgccaatgtctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGC
atgtaac putative branch site (score: 181)
taaatgtaacatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctgcttgtttggtgatgtcaagtataaattagttagcccagatttgtaatacctgatttcttgtttcatgtcttctcctggcttgaattgtgccgtcaagtagtgtccctgggctaaatgtaacatttatgtttatgccaatgtctattgcagATGGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC