Sequence
atgc intronic sequence ATGC exonic sequence...cctgttggattttcaataccattatctgagcctacgccagtaaaactaatatcctgttctagagcgatgtaacattttttttgcatttttatcggctcagTCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G021846_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g07130.2 (Oryza sativa), 3'ss of exon 8
cctgttggattttcaataccattatctgagcctacgc-cagtaaaactaatatcctgttctagagcgatgtaacattttttttgcatttttatcggctcagTCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAATGAG
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-cttctagtttgtatatatttccttggagttctcagtgcagttacacacatttctggtggtagaataatctaacagttcttttttgggttaattggttcagTCTGCAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAG
upper sequence: GRMZM2G021846_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 16
---------------------------------------cctgttggattttcaataccattatctgagcctacgccagtaaaactaatatcctg--ttctagagcgatgtaacattttttttgcatttttatcggctcagTCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAATGAG
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tcatccattgaaatgtcattaaccatgggtgcttgattccctggtttatgtt-agtttcattct-tggactcatgat-gttatggtactgtcatgctttctagGAAAACTTACAATCCATGTCATATTCTTCTCTGC--AGTCTGCTGATTTCTTTCGAGCTGACAATCCTGAAGGTGTGGAGGCACGTAATGAG
upper sequence: GRMZM2G021846_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA14G37520.3 (Glycine max), 3'ss of exon 8
---cctgttggattttcaataccattatctgagcctacgccagtaaaactaatatcctg--ttctagagcgatgtaacattttttttgcatttttatcggctcagTCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAATGAG
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ttccctggtttatgtt-agtttcattct-tggactcatgat-gttatggtactgtcatgctttctaggaaaacttacaatccatgtcatattcttctctgc--agTCTGCTGATTTCTTTCGAGCTGACAATCCTGAAGGTGTGGAGGCACGTAATGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32840579|gb|CD980260.1|CD980260EST: TATCGCCGTCTTAAGCTTGGAGCAAATCAG TCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAAT
genomic: TATCGCCGTCTTAAGCTTGGAGCAAATCAGgtgaggacta ... atcggctcagTCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaatatcctgttctagagcgatgtaacattttttttgcatttttatcggctcagTCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAATGAG
tttttatc CT-rich tract
taacattttttttgca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctgttggattttcaataccattatctgagcctacgccagtaaaactaatatcctgttctagagcgatgtaacattttttttgcatttttatcggctcagTCTGCAGATTTTTTCCGTGATGATAATCCTGAAGGTATTGAGGCACGTAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG