1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtctgcatttgtttgctttcctgattttccattgcctacctttgtcatttaaatgggtcattattatgttgttaatcatttaagttgttcattattggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATTATTGATCACAAAAAGGATTTTGTCTGGGTAGATGACCAAGATGGCAACC
species | Zea mays |
transcript | GRMZM2G021270_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: G-AAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAG GGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGATGTACTTTGAAGATATTEST: gi|18963118|gb|BM660250.1|BM660250
genomic: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAGgtctgcattt ... attggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATT
EST: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAG GGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATTEST: gi|31354680|gb|CD439037.1|CD439037
genomic: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAGgtctgcattt ... attggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATT
EST: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAG GGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATTEST: gi|18655210|gb|BM500015.1|BM500015
genomic: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAGgtctgcattt ... attggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATT
EST: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAG GGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATTEST: gi|18662206|gb|BM501800.1|BM501800
genomic: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAGgtctgcattt ... attggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATT
EST: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAG GGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATTEST: gi|18661837|gb|BM501604.1|BM501604
genomic: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAGgtctgcattt ... attggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATT
EST: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAG GGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATT
genomic: GAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAATACTACAAGgtctgcattt ... attggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATT
ttaaatgggtcattattatgttgttaatcatttaagttgttcattattggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATTATTGATCACAAAAAGGATTTTGTCTGGGTAGATGACCAAGATGGCAACC
tgttaat putative branch site (score: 3)
attattatgttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgcatttgtttgctttcctgattttccattgcctacctttgtcatttaaatgggtcattattatgttgttaatcatttaagttgttcattattggtacagGGGTTGGGGACAAGCACAGCCAAAGAAGGCCGGAAGTACTTTGAAGATATTATTGATCACAAAAAGGATTTTGTCTGGGTAGATGACCAAGATGGCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG