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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtttccttcccaaaccttttgtgctatggatatcacttgcatttttccttccaaaagatgaccaatgctattttcctttgtatgcagGCTATACCGATCCTTCTAAACCAGATCTTCCCCGGTTGCATGAATGGCAATTTCGATCTGGACTGGATCGCTACATTTGGATCGTGGGGATGATATATGC

Basic information

species Zea mays
transcript GRMZM2G020721_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020721_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 3'ss of exon 8
gcaagtttccttcccaaaccttttgtgctatggatatcacttgcatttttccttccaaaagatgaccaatgctattttcctttgtatgcagGCTATACCGATCCTTCTAAACCAGATCTTCCCCGGTTGCATGAATGGCAATTTCGATCTGGACTGGATCGCTACATTTGGATCGTGGGGATGATATATGC
| |||||| ||    |||| ||| |||   | ||||     |  || | |  ||   || ||||| |||||  |||| |||| || |||||||||||| ||||| |||||||| ||||| || || |||||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||
gtaagttttctctgtaaacttttagtgagtttgatagtttatatatatatttttagtaaggatgatcaatgtaatttacctt-gtgtgcagGCTATACTGATCCATCTAAACCTGATCTCCCTCGATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGATTTATGC

upper sequence: GRMZM2G020721_T01 (Zea mays), 3'ss of exon 8
lower sequence: PP1S5_239V6.1 (Physcomitrella patens), 3'ss of exon 8
--gcaagtt--tccttcccaaacctt-----ttgtgctatggatatcacttgcatttttccttccaaaagatgaccaatgctattttcctttgtatgcagGCTATACCGATCCTTCTAAACCAGATCTTC---CCCGGTTGCATGAATGGCAATTTCGATCTGGACTGGATCGCTACATTTGGATCGTGGGGATGATATATGC
  | || ||  | ||    ||  ||      ||| | | |   | ||| |            | |||   |||    ||| | |||   | | | |||||  |||    | || ||  |  |    |  |   ||  | | ||||||||||| ||| |||| ||||||||||| || ||||||||||| || ||| | ||   
aggaaacttagtactgtgtaattctagaaaattgggttgtctttgtcattccagcacaaatgtgcaatttatgtatgatggtttttggttgtttgtgcagCGTATCAAAACCCCTCGCATGCGACCCCGCAGCCCTTGCTTCATGAATGGCATTTTAGATCAGGACTGGATCGATATATTTGGATCGTCGGCATGCTCTA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacttgcatttttccttccaaaagatgaccaatgctattttcctttgtatgcagGCTATACCGATCCTTCTAAACCAGATCTTCCCCGGTTGCATGAATGGCAATTTCGATCTGGACTGGATCGCTACATTTGGATCGTGGGGATGATATATGC
                                 tgctattttccttt  CT-rich tract
        attttt  TA-rich tract