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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attataattattaaaatggaattcaattctaacgaaacaaacggggtctaactgttatttagagggccacgttctgcttgtcctaatggttctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTGTACCTTCTCCCTGCTCTGCCCCGCAACAAGTGGCCTCAAGGCTACGTT

Basic information

species Zea mays
transcript GRMZM2G019673_T03
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32808783|gb|CD961017.1|CD961017
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|32788877|gb|CD941113.1|CD941113
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|32798890|gb|CD951126.1|CD951126
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|67026471|gb|CO455220.1|CO455220
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|32799228|gb|CD951464.1|CD951464
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|32799334|gb|CD951570.1|CD951570
EST:     AGCGATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|211427629|gb|FL452060.1|FL452060
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|37377099|gb|CF625124.1|CF625124
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|71309632|gb|DR791094.1|DR791094
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|71309630|gb|DR791093.1|DR791093
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|67026461|gb|CO455210.1|CO455210
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|211427630|gb|FL452061.1|FL452061
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|211427631|gb|FL452062.1|FL452062
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|37401637|gb|CF638187.1|CF638187
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|211305793|gb|FK975906.1|FK975906
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|71449808|gb|DR830858.1|DR830858
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|60346394|gb|DN213367.1|DN213367
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|60397603|gb|DN230419.1|DN230419
EST:     AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|78113504|gb|DV531895.1|DV531895
EST:     GCAATCTGTTCACTGCACATCCACCTTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: GCAATCTGTTCACTGCACATCCACCTTT-CCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: gi|211305792|gb|FK975905.1|FK975905
EST:     AGCAATCTGTACACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG                         GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctaactgttatttagagggccacgttctgcttgtcctaatggttctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTGTACCTTCTCCCTGCTCTGCCCCGCAACAAGTGGCCTCAAGGCTACGTT
                                   tcctaat  putative branch site (score: 2)
                                            ttctcttac  putative PPT
       tgttattta  TA-rich tract