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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttaatcatcatgtatcgtgatatgttcgtatctgtggaaaaatgaagcgttaatctttaattatttttaactgaattctctgtttttcttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTGTTGGCTGCAAGGGATGCTTGCCTTGAGATAAGGCTTCACATGCGAGAGA

Basic information

species Zea mays
transcript GRMZM2G019260_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019260_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g14830.1 (Oryza sativa), 3'ss of exon 8
-ttttaatcatcatgtatcgt--gatatgttcgtatctgtggaaaaatgaagcgttaatctttaattatttttaactgaattctctgtttttcttctctgca-gTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTGTTGGCTGCAAGGGATGCTTGCCTTGAGATAAGGCTTCACATGCGAGAGA
 || |  |  | |  ||||    | |   |  ||   | |||||| |  |  |||    |||| | || | |   || ||  || |  | ||  |   |||| |||||||||||||||||| || |||||||||||| ||||| ||| ||||||  |||| ||||| ||||||| |||||| ||||||||||| ||||||||||
cttcttgttcttagttatcaccaggtgcatctgtgaatttggaaagagaactcgt----ctttcagtactatatgctaaaaccttttctctttgttcttgcaagTGGACAGAGGTGGCTACCAATCAACATCAAGAACTAATTGTTAGATCATTACTGGCCGCAAGAGATGCTTTCCTTGAAATAAGGCTTCATATGCGAGAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78089474|gb|DV517848.1|DV517848
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|76285162|gb|DV024730.1|DV024730
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|74234774|gb|DT642688.1|DT642688
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|78093391|gb|DV521765.1|DV521765
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|9254989|gb|BE345457.1|BE345457
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCT
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCT
EST: gi|60345166|gb|DN212139.1|DN212139
EST:     AGGCATATGAGTCCGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAGGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|58029394|gb|CX724821.1|CX724821
EST:     AGGCATATGAGTCCGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
EST: gi|211480442|gb|FL214852.1|FL214852
EST:     AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAG                         TGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG
genomic: AGGCATATGAGTCGGTAGTGCTATCCTGTAGCCATCTCACTTATGAGAAGgtaactgcat ... ttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagcgttaatctttaattatttttaactgaattctctgtttttcttctctgcagTGGACAGAGGTGGCTACTAACCAACATCAAGAATTAATTATTAAATCATTGTTGGCTGCAAGGGATGCTTGCCTTGAGATAAGGCTTCACATGCGAGAGA
                     ttttaac  putative branch site (score: 2)
                                ttctctgtttttcttc  putative PPT
      ttaatctttaattatt  TA-rich tract