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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaatttgttggtaaacaaaaattatttcccttatcacgggacgggaatctactgtctttgttaagtctgcatgctcttcagcgtttaaatccagctcattttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGAACCTCGTTCACGTCAGAAACAGCACCCAGTAGCTAGGACGCGGCACCG

Basic information

species Zea mays
transcript GRMZM2G019225_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019225_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g03560.2 (Oryza sativa), 3'ss of exon 7
gtaacaaatttgttggtaaacaaaaattatttcccttatcacgggacgggaatctactgtctttgttaagtctgcatgct--cttcagcgtttaaatc-cagctcattttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGAACCTCGTTCACGTCAGAAACAGCACCCAGTAGCTAGGACGCGGCACCG-
             || ||        |  |  | ||| | | |  |    ||     ||| ||  ||||  ||  |||    || ||   | |||||  | |||||||||| |||||||||||| || |||||||| ||||||||||||||||| || ||||||||||| || || || |||||||||||||||||||||  | |       |  | 
------------gtgctattttctgctgttaactcttgttatgacatattaa---gatgtgttatttaaaccttaatgtcagctgcatattctaaattgccgctcattttt-gcagTTTGCTGGGGGATTCGATCCAGAGACCATGGATGCATTTGAAGAGCTGAGGAATCTTGTGCATGTCAGAAACAGCACCCAGTAGG-AAGTTAAAAAAATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32937123|gb|CF041942.1|CF041942
EST:     TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGGTGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: gi|211386805|gb|FL474300.1|FL474300
EST:     TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: gi|211541883|gb|FL034159.1|FL034159
EST:     TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: gi|88753366|gb|DY537507.1|DY537507
EST:     TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: gi|211541882|gb|FL034158.1|FL034158
EST:     TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: gi|32935306|gb|CF040118.1|CF040118
EST:     ACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: ACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: gi|211541881|gb|FL034157.1|FL034157
EST:     TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
EST: gi|60401059|gb|DN233866.1|DN233866
EST:     TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAG                         TTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG
genomic: TGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatt ... ttttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttgttaagtctgcatgctcttcagcgtttaaatccagctcattttttgcagTTTGCTGGAGGTTTCGATCCGGAGACCATGGATGCATTCGAGGAGCTGAGGAACCTCGTTCACGTCAGAAACAGCACCCAGTAGCTAGGACGCGGCACCG
                                         ctcatttttt  CT-rich tract
                                          tcatttttt  TA-rich tract