Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctcaactaagatgcttagtatttcagtactcacattaatttccatgcatgtattcttgttttggagttcttagttgaccatgctttcacttttacgcagTGCACTTGAAAATGGAGTACATGTTGATGAAGTGGCAAGGAGACTTGGAATGCCAAGCGCACAAATTCTGTATATAAAACTCCACTCATATATTTGATCA

Basic information

species Zea mays
transcript GRMZM2G018946_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86470316|gb|DY236686.1|DY236686
EST:     CACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT                         TGCACTTGAAAATGGAGTACATGTTGATGAAGTGGCAAGGAGACTTGGAAT
genomic: CACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACTgtaagatcgg ... ttttacgcagTGCACTTGAAAATGGAGTACATGTTGATGAAGTGGCAAGGAGACTTGGAAT
EST: gi|78091532|gb|DV519906.1|DV519906
EST:     CACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT                         TGCACTTGAAAATGGAGTACATGTTGATGAAGTGGCAAGGAGACTTGGAAT
genomic: CACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACTgtaagatcgg ... ttttacgcagTGCACTTGAAAATGGAGTACATGTTGATGAAGTGGCAAGGAGACTTGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatgtattcttgttttggagttcttagttgaccatgctttcacttttacgcagTGCACTTGAAAATGGAGTACATGTTGATGAAGTGGCAAGGAGACTTGGAATGCCAAGCGCACAAATTCTGTATATAAAACTCCACTCATATATTTGATCA
                           agttgac  putative branch site (score: 4)
                                      ctttcactttt  putative PPT
      tattctt  TA-rich tract