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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgggaaaaaaaatccaggatgacagttgatgtcctgtctgtccctttatttttgtgacccaaagaaagaacaaaatgacctatgtcagcaacctgactgtttcctcccatatctttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAGATGTTCCAACCCTTCACCCTGTTGCGGTGATGTGCTGAAGACAGATCAG

Basic information

species Zea mays
transcript GRMZM2G018177_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176083|gb|BM351165.1|BM351165
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|17931741|gb|BM268701.1|BM268701
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18162555|gb|BM332394.1|BM332394
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|24766239|gb|CA401394.1|CA401394
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|33467983|gb|CF245032.1|CF245032
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18168315|gb|BM338155.1|BM338155
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|32935495|gb|CF040307.1|CF040307
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAATCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|113591318|gb|DW758747.1|DW758747
EST:     GCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: GCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|21626066|gb|BQ620987.1|BQ620987
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCACCGTGTGAAGTCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|30087627|gb|CB885833.1|CB885833
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|60352667|gb|DN219640.1|DN219640
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|33094781|gb|CF054775.1|CF054775
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAATCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|16925608|gb|BM078676.1|BM078676
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|14208462|gb|BG842140.1|BG842140
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18161941|gb|BM331780.1|BM331780
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18165625|gb|BM335464.1|BM335464
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18165365|gb|BM335204.1|BM335204
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|76012320|gb|DT939490.1|DT939490
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18173240|gb|BM348628.1|BM348628
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|5069936|gb|AI737901.1|AI737901
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCACCGTGTGAAGTCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|31358045|gb|CD442402.1|CD442402
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|213175742|gb|FM182722.1|FM182722
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAATCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18165667|gb|BM335506.1|BM335506
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18172926|gb|BM348314.1|BM348314
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|31405699|gb|CD484431.1|CD484431
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|32908101|gb|CF012914.1|CF012914
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAAACAGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|91874218|gb|EB404175.1|EB404175
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|211522699|gb|FL104754.1|FL104754
EST:     AGCACAGCCTGATGTCGATGGTTNCCTTGTGGGCAGTGCATCTTTTGAAG                         CCCGAGT-CATCGACAT-ATCAACGGCGCCGCCGTGTGAAGTCCGCTGAA
genomic: AGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTT-GAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAA
EST: gi|7227504|gb|AW566145.1|AW566145
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCACCGTGTGAAGTCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|61118536|gb|DN559497.1|DN559497
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAAGGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|28982480|gb|BQ538137.2|BQ538137
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|60341170|gb|DN208143.1|DN208143
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|60397817|gb|DN230633.1|DN230633
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCACCGTGTGAAGTCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18174112|gb|BM349500.1|BM349500
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|211002461|gb|FL361134.1|FL361134
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|78024857|gb|DV493244.1|DV493244
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCACCGTGTGAAGTCCGCTTAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|17929542|gb|BM266502.1|BM266502
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|50335056|gb|CO530182.1|CO530182
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18169243|gb|BM339083.1|BM339083
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|86468468|gb|DY234838.1|DY234838
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18172280|gb|BM347668.1|BM347668
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18175195|gb|BM350583.1|BM350583
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18169675|gb|BM339515.1|BM339515
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|18172878|gb|BM348266.1|BM348266
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|76013518|gb|DT940688.1|DT940688
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
EST: gi|91056160|gb|EB166578.1|EB166578
EST:     CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG                         CCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG
genomic: CAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 23 (upstream exon), 27 (downstream exon)
Score: 1

GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacgggaa ... ttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAGATGTTCCAACCCTTCACCCTGTTGCGGTGATGTGCTGAAGACAGATCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaaatgacctatgtcagcaacctgactgtttcctcccatatctttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAGATGTTCCAACCCTTCACCCTGTTGCGGTGATGTGCTGAAGACAGATCAG
                     acctgac  putative branch site (score: 1)
                              tttcctcccatatctt  putative PPT
                                       atatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacgggaaaaaaaatccaggatgacagttgatgtcctgtctgtccctttatttttgtgacccaaagaaagaacaaaatgacctatgtcagcaacctgactgtttcctcccatatctttgtctccagCCCGAGTTCATCGACATCATCAACGCCGCCGCCGTGTGAAGTCCGCTGAAGATGTTCCAACCCTTCACCCTGTTGCGGTGATGTGCTGAAGACAGATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA