1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttatttatttatttattttcattctcagtttatgttcaataataacatataacaacggtccagtgattctctcgagtttgtgttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGACCTTTTCGAGGAGAAGATCAACCGCGCGCCCCTCTCTAGCTGCGAGTGG
species | Zea mays |
transcript | GRMZM2G016858_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCG GCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGAEST: gi|60347484|gb|DN214457.1|DN214457
genomic: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCGgtatttattt ... ttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGA
EST: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCG GCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGAEST: gi|60356304|gb|DN223277.1|DN223277
genomic: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCGgtatttattt ... ttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGA
EST: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCG GCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGAEST: gi|67017163|gb|CO445912.1|CO445912
genomic: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCGgtatttattt ... ttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGA
EST: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCG GCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGAEST: gi|148928681|gb|EC873275.2|EC873275
genomic: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCGgtatttattt ... ttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGA
EST: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCG GCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGAEST: gi|78021869|gb|DV490256.1|DV490256
genomic: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCGgtatttattt ... ttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGA
EST: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCG GCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGA
genomic: CTTGTGAACAAAATGATGCAAAGCAAAGAGTTGTTTGAGGCTACAATCCGgtatttattt ... ttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGA
aataataacatataacaacggtccagtgattctctcgagtttgtgttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGACCTTTTCGAGGAGAAGATCAACCGCGCGCCCCTCTCTAGCTGCGAGTGG
taacatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatttatttatttattttcattctcagtttatgttcaataataacatataacaacggtccagtgattctctcgagtttgtgttttgagcagGCAGCCATGCTTCTGCGATACTCCATTTGTTCTGGTTCTGAACAAGTACGACCTTTTCGAGGAGAAGATCAACCGCGCGCCCCTCTCTAGCTGCGAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC