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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcctgcattcccctgtcttgcatgtctccacaagccacttctgatttggataaaaatgctttctagtaatggttagttccaaaacattcaaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG

Basic information

species Zea mays
transcript GRMZM2G015989_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015989_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------------------------------------------agcctgcattcccctgtcttgcatgtctccacaagccacttctgatttggataaaaatgctt-----tctagtaatggttagttcca-aaacattcaaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG
                                                                                              |   |  | |  ||| ||||  |  ||| | ||  |||  |||||||  | |||  |     | |  |  ||| |  ||  | ||    |    | |||||| | ||||||| |||||||||| ||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||
gtctgtattatttaaaattaaaaattctatgtgttcctgtacttctcgtcaaaccactcctgtattcattttctcctgaccctgctcttttttgggggtttctttgcttacatgaatttacagggcagatct--tttggattcacatgtctcagtatttttttgtggatttttatacaagttattttttcttcagGTTGCTGAACAGGAATATGAGAAAGAAAAACTGAATGAGAGAATAGCTAAGCTCTCTGGTGGTGTTGCTGTCATCCAG

upper sequence: GRMZM2G015989_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G18760.2 (Glycine max), 3'ss of exon 7
agcctgcattcccctgtcttgcatgtctccacaagccacttctgatttggataaaaatgctttctagta-atggt-tagttccaa--aacattcaa-attttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG
      ||||       || | |    | |   |   ||    || |  |  |||  | | ||||  |  ||| | ||      |  |  | | || |||  |||||| |||| ||||| ||||||| |||||| || || ||||| || |||||| | ||||||||||| ||||| || |||
-----acattagtagacctaggagaaattctgtacagacgggagagtatgtaaaagcttcattcttctccatgttctaacaatgatgattacttaacattaacagGCTGCTGAGCAAGAGTATGAGAAAGAAAAGCTGAATGAGAGAATTGCTAAATTGTCTGGTGGTGTGGCTGTGATACAG

upper sequence: GRMZM2G015989_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA15G40110.1 (Glycine max), 3'ss of exon 7
agcctgcattcccctgtcttgcatgtctccacaagccacttctgatttggataaaaatgctttctagtaatggttagttcca---aaacattcaaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG
  | ||  |   ||        || |||  ||             | || | ||   |  ||  |    ||||||    | |       | | ||  || |||||| |||| ||||| ||||||| |||||| || || ||||| || |||||| | ||||||||||| |||||||| |||
cacatgagtagtccaaggagaaat-tctgtactgatgggag--agtatgtaaaagcttcattcttctccatggttctaacaatgtggttactgaacattacagGCTGCTGAGCAAGAGTATGAGAAAGAAAAGCTGAATGAGAGAATTGCTAAATTATCTGGTGGTGTGGCTGTCATACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093495|gb|CF053489.1|CF053489
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|67024753|gb|CO453502.1|CO453502
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAA-AATATGAGAGAGAGAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840618|gb|CD980299.1|CD980299
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840181|gb|CD979862.1|CD979862
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGACCAAGAATATGAGAGAGAAAAACTGAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32935097|gb|CF039909.1|CF039909
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGACCAAGAATATGAGAGAGAAAAACTAACCGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|33093072|gb|CF053066.1|CF053066
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|67018624|gb|CO447373.1|CO447373
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAGAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840587|gb|CD980268.1|CD980268
EST:     AAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGGGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: AAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|211161903|gb|FL325520.1|FL325520
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|33099832|gb|CF059792.1|CF059792
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840153|gb|CD979834.1|CD979834
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGACCAAGAATATGAGAGAGAAAAACTAACCGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32933116|gb|CF037928.1|CF037928
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|33091567|gb|CF051561.1|CF051561
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840911|gb|CD980592.1|CD980592
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAGGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32933836|gb|CF038648.1|CF038648
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|31356086|gb|CD440443.1|CD440443
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|33095277|gb|CF055271.1|CF055271
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|67021281|gb|CO450030.1|CO450030
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAGAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|26457560|gb|CA829143.1|CA829143
EST:     AAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: AAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840280|gb|CD979961.1|CD979961
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840621|gb|CD980302.1|CD980302
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840609|gb|CD980290.1|CD980290
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGATCAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|33094337|gb|CF054331.1|CF054331
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32934585|gb|CF039397.1|CF039397
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840466|gb|CD980147.1|CD980147
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|67017327|gb|CO446076.1|CO446076
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAGAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|21891546|gb|BQ744759.1|BQ744759
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32841055|gb|CD980736.1|CD980736
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|78081967|gb|DV510379.1|DV510379
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|67022736|gb|CO451485.1|CO451485
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAGAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32936737|gb|CF041556.1|CF041556
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|33100370|gb|CF060330.1|CF060330
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|211268018|gb|FL355151.1|FL355151
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32841445|gb|CD981126.1|CD981126
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|33095378|gb|CF055372.1|CF055372
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32840449|gb|CD980130.1|CD980130
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
EST: gi|32841470|gb|CD981151.1|CD981151
EST:     CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAG                         GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA
genomic: CACAGGAGGAAGTGAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGgtttgcattc ... aaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggataaaaatgctttctagtaatggttagttccaaaacattcaaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG
                                                ttttc  CT-rich tract
                                    aaaacattcaaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agcctgcattcccctgtcttgcatgtctccacaagccacttctgatttggataaaaatgctttctagtaatggttagttccaaaacattcaaattttcagGCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - tgcattc
- - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - -cacaagc
- - - - - - - - - - - - - - - - - - - cttctga
- - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaaca