1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataaactttctgtttctataaactgccctagttctttttcatacagcttacgaaatccacagtgcgttaggggcaatcaacattgtattcttacatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGTCATCTTGAGGCGACCACCTAGCGGTGTGACGAGCTAACTCTTGTTGCA
species | Zea mays |
transcript | GRMZM2G015610_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|211383182|gb|FL436925.1|FL436925
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: GAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|71436497|gb|DR817547.1|DR817547
genomic: GAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|60344692|gb|DN211665.1|DN211665
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|60341906|gb|DN208879.1|DN208879
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|60357724|gb|DN224697.1|DN224697
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|149074571|gb|EE162972.2|EE162972
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|89759152|gb|DY688060.1|DY688060
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|71430015|gb|DR811065.1|DR811065
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|78026416|gb|DV494803.1|DV494803
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: AGTTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|60349214|gb|DN216187.1|DN216187
genomic: AG-TTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|67021753|gb|CO450502.1|CO450502
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|88746951|gb|DY531092.1|DY531092
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGGGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGEST: gi|60338391|gb|DN205364.1|DN205364
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
EST: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAG ACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
genomic: CAGTTGCCAGGAAAAGAAAGAGGCGATGGAGGGGAAGCGTCACTCGCGAGgtataaactt ... acatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAG
ttacgaaatccacagtgcgttaggggcaatcaacattgtattcttacatgtgcagACTCCTCGTCAAGAAATAGCGGGTCAAGTGAATAGTGACTAAAGCCAGGAGTCATCTTGAGGCGACCACCTAGCGGTGTGACGAGCTAACTCTTGTTGCA
ttcttac putative branch site (score: 63)
ttcttac CT-rich tract
attgtatt TA-rich tract