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gtacaatctgtatgttttcaaaattgatctaataataactccaggtgggtttatctcaatgatcacctattttcttttcctgctgtaatgtgatgggaaaaaaagGTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATACAGTGGACAAGTCTGTGGGAATTCTTCAAGGAGGAATATGAGAAGGAGAAGGATCTTCTTGGG
species | Zea mays |
transcript | GRMZM2G014116_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATACAGTGGACAAGTCTEST: gi|211150172|gb|FL276377.1|FL276377
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacaatctg ... ggaaaaaaagGTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATACAGTGGACAAGTCT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTACTGGAAGCAGCTGGCCACCCATGGAGGTGATACAGTGGGACAAGEST: gi|211195781|gb|FL452346.1|FL452346
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacaatctg ... ggaaaaaaagGTTATTACTG-AAGCAGCTGGTCACC-ATGGAGGTGATACAGTGG-ACAAG
EST: TCAATGCTACACTAGAGGATAAAAACCTTTTCAGAAATCCCAAATTTCAG GTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATACAGTGGACAAGTCTEST: gi|26457612|gb|CA829195.1|CA829195
genomic: TCAATGCTACACTAGAGGATAAAAACC-TTTCAGAAATCCCAAATTTCAGgtacaatctg ... ggaaaaaaagGTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATACAGTGGACAAGTCT
EST: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG GTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATA
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacaatctg ... ggaaaaaaagGTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATA
ttatctcaatgatcacctattttcttttcctgctgtaatgtgatgggaaaaaaagGTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATACAGTGGACAAGTCTGTGGGAATTCTTCAAGGAGGAATATGAGAAGGAGAAGGATCTTCTTGGG
tattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatctgtatgttttcaaaattgatctaataataactccaggtgggtttatctcaatgatcacctattttcttttcctgctgtaatgtgatgggaaaaaaagGTTATTACTGAAGCAGCTGGTCACCATGGAGGTGATACAGTGGACAAGTCTGTGGGAATTCTTCAAGGAGGAATATGAGAAGGAGAAGGATCTTCTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA