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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttgaatgtttgcaaaatggatctcataactccaggctggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA

Basic information

species Zea mays
transcript GRMZM2G013750_T04
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g63430.1 (Oryza sativa), 3'ss of exon 8
gtacagttgaatgtttgcaaaatggatctcataactccaggctggctta--tctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA
            ||  |  |  | | | |||  | | ||   |  | |   | | |||  ||  | |  |||||  | |    ||    |  || || |||||| |||||||||| || || ||||||||||| || |||||||||   ||||||||||||| |||  | |||| ||  || ||||||||| | || |||
------------gtacgttatgttgctttcaggattacaaattatcatggtttttaatgttctttctaattcctacttttgc-tgtttggatgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTGTGGGAATTCTTTAAAGATGAATATGCGAATGAGAAGAATTTTCTCGGA

upper sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G32030.2 (Glycine max), 3'ss of exon 8
gtacagttgaatgtttgcaaaatggatctcata-actccaggctg-gcttatctcaata--atcactttttttcctgttgtga-tgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA--
       |   |  |   ||  |  ||||||   | |||| |    | | || |   ||  ||  | || |    || ||||  ||| |  ||  |     |||||| |  |||| |||||||||||||||||||| ||||| |||||  |  | |||||    | ||||   || ||||| || ||||||   |  || |||  
------gtatgttatcctaacttttatctcacgtattccaagtcatgttcattttcttaggatttccttgtcatttggtgtgcctgttatatgttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGG--CCTCTGGGAAA

upper sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G15340.1 (Glycine max), 3'ss of exon 8
gtacagttgaatgtttgcaaaatggatctcataactcc--aggctggcttatctcaata--atcactttttttcctgttgtga-tgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA--
       |   |  |   ||  |  ||| |||   | |  || |  | | || |   ||  ||  | || |    || |||   ||| |  || | |   | || || |  |||| |||||||||||||||||||| ||||| |||||| |  | |||||    | ||||   || ||||| || ||||||   |  || |||  
------gtatgttctcctaacttttatcccatgttttccaagtcacgttcatttgtttaggatttccttgtcatttggtgtacctgttatatgtgtgccta-gGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGG--CCTCTGGGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6194444|gb|AW146548.1|AW146548
EST:     CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGTTTT
genomic: CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|5847143|gb|AW000222.1|AW000222
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60345832|gb|DN212805.1|DN212805
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60349290|gb|DN216263.1|DN216263
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60344063|gb|DN211036.1|DN211036
EST:     AGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAG-TGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: AGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60358924|gb|DN225897.1|DN225897
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|211088675|gb|FL328946.1|FL328946
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGT
EST: gi|67021450|gb|CO450199.1|CO450199
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|33095588|gb|CF055582.1|CF055582
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA
          aataatcacttttttt  TA-rich tract