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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttgaatgtttgcaaaatggatctcataactccaggctggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA

Basic information

species Zea mays
transcript GRMZM2G013750_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g63430.1 (Oryza sativa), 3'ss of exon 8
gtacagttgaatgtttgcaaaatggatctcataactccaggctggctta--tctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA
            ||  |  |  | | | |||  | | ||   |  | |   | | |||  ||  | |  |||||  | |    ||    |  || || |||||| |||||||||| || || ||||||||||| || |||||||||   ||||||||||||| |||  | |||| ||  || ||||||||| | || |||
------------gtacgttatgttgctttcaggattacaaattatcatggtttttaatgttctttctaattcctacttttgc-tgtttggatgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTGTGGGAATTCTTTAAAGATGAATATGCGAATGAGAAGAATTTTCTCGGA

upper sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G32030.2 (Glycine max), 3'ss of exon 8
gtacagttgaatgtttgcaaaatggatctcata-actccaggctg-gcttatctcaata--atcactttttttcctgttgtga-tgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA--
       |   |  |   ||  |  ||||||   | |||| |    | | || |   ||  ||  | || |    || ||||  ||| |  ||  |     |||||| |  |||| |||||||||||||||||||| ||||| |||||  |  | |||||    | ||||   || ||||| || ||||||   |  || |||  
------gtatgttatcctaacttttatctcacgtattccaagtcatgttcattttcttaggatttccttgtcatttggtgtgcctgttatatgttgtgcctagGTTACTTTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACCACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGG--CCTCTGGGAAA

upper sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G15340.1 (Glycine max), 3'ss of exon 8
gtacagttgaatgtttgcaaaatggatctcataactcc--aggctggcttatctcaata--atcactttttttcctgttgtga-tgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA--
       |   |  |   ||  |  ||| |||   | |  || |  | | || |   ||  ||  | || |    || |||   ||| |  || | |   | || || |  |||| |||||||||||||||||||| ||||| |||||| |  | |||||    | ||||   || ||||| || ||||||   |  || |||  
------gtatgttctcctaacttttatcccatgttttccaagtcacgttcatttgtttaggatttccttgtcatttggtgtacctgttatatgtgtgccta-gGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGG--CCTCTGGGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6194444|gb|AW146548.1|AW146548
EST:     CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGTTTT
genomic: CAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|5847143|gb|AW000222.1|AW000222
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|67023237|gb|CO451986.1|CO451986
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|78545102|gb|DV622600.1|DV622600
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60394675|gb|DN227545.1|DN227545
EST:     AGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: AGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|37377438|gb|CF625322.1|CF625322
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60345832|gb|DN212805.1|DN212805
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60396663|gb|DN229531.1|DN229531
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|149074395|gb|EE162783.2|EE162783
EST:     CCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|67021450|gb|CO450199.1|CO450199
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|37400251|gb|CF637475.1|CF637475
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|60358924|gb|DN225897.1|DN225897
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|211414360|gb|FL328790.1|FL328790
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|78023300|gb|DV491687.1|DV491687
EST:     CAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
EST: gi|33095588|gb|CF055582.1|CF055582
EST:     CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAG                         GTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT
genomic: CTCAATGCTACACTAGAGGATAAAAACCTTTCAGAAATCCCAAATTTCAGgtacagttga ... ggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttatctcaataatcactttttttcctgttgtgatgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA
          aataatcacttttttt  TA-rich tract