1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttaaacttagcagatctttctttgtctaataataatagtgaacaatataatagattctacttttattcatactccttttcaactgtgttacttttacagACATCAATCAGTCTTGGCACGACTTGCAAACTGGGAAGCTATTACATCG
species | Zea mays |
transcript | GRMZM2G011169_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGATGTTATGACAGAGCCCTTGCGATTGGTCTAAAAGGATATGCGAAACT ACATCAATCAGTCTTGGCACGACTTGCAAACTGGGAAGCTATTACATCGEST: gi|160481556|gb|EY254388.1|EY254388
genomic: CGATGTTATGACAGAGCCCTTGCGATTGGTCTAAAAGGATATGCGAAACTgtatgtgctt ... acttttacagACATCAATCAGTCTTGGCACGACTTGCAAACTGGGAAGCTATTACATCG
EST: CGATGTTATGACAGAGCCCTTGCGATTGGTCTAAGAGGATATGCGAAACT ACATCAATCAGTCTTGGCACGACTTGCAAACTGGGAAGCTATTACATCG
genomic: CGATGTTATGACAGAGCCCTTGCGATTGGTCTAAAAGGATATGCGAAACTgtatgtgctt ... acttttacagACATCAATCAGTCTTGGCACGACTTGCAAACTGGGAAGCTATTACATCG
atataatagattctacttttattcatactccttttcaactgtgttacttttacagACATCAATCAGTCTTGGCACGACTTGCAAACTGGGAAGCTATTACATCG
ttactttt CT-rich tract
attctacttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaacttagcagatctttctttgtctaataataatagtgaacaatataatagattctacttttattcatactccttttcaactgtgttacttttacagACATCAATCAGTCTTGGCACGACTTGCAAACTGGGAAGCTATTACATCG
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