Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgcgatgatacccacaagtcgtttcctccctacaaataacatttcactctcatataagtttctgtctgcaacacatgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG

Basic information

species Zea mays
transcript GRMZM2G011078_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011078_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g38590.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------gtaaatgcgatgatacccac--aagtcgtttcctcccta----caaataacatttcactctcatataagtttctgtctgcaacacatgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
                                          |   || ||| ||        | ||  | |  |   ||     || ||| || ||  |  |  |||| ||| | ||||||| || | |   |||||| ||||| ||||| || || |||||||||||||| |||||||||
gtaaatgaaatattactacttgtcacacattataatttgcattttttgggatcattttttgtgaggttttctgttgtttagttcgaactaatatctccttggctcataa-tttatttctgcaaaacgtat-cacagGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76927248|gb|DV171197.1|DV171197
EST:     TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG                         GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
genomic: TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcga ... atgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
EST: gi|71440938|gb|DR821988.1|DR821988
EST:     TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG                         AAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
genomic: TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcga ... atgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
EST: gi|78080153|gb|DV508565.1|DV508565
EST:     TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAG                         GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
genomic: TGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcga ... atgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacaaataacatttcactctcatataagtttctgtctgcaacacatgtgtgcagGAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG
    aaataac  putative branch site (score: 2)
     aataacattt  TA-rich tract