1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttttctttttttttcgaaaaagctcttcttgttgaatatagtagcaggttaattattaacaagtgggtacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACAGTTGTTCCTGGTACTGTTGAATCCATTGGGAAGTTAGTTCAGCAGCTTT
species | Zea mays |
transcript | GRMZM2G007647_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG AGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACAEST: gi|60356357|gb|DN223330.1|DN223330
genomic: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACA
EST: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG AGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACAEST: gi|89247463|gb|DY619249.1|DY619249
genomic: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACA
EST: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG AGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTTACA-CEST: gi|211044763|gb|FL481858.1|FL481858
genomic: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATT-ACAAC
EST: CAGGGGCTACAATATACAG AGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACAEST: gi|67022242|gb|CO450991.1|CO450991
genomic: CAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACA
EST: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG AGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACAEST: gi|89247462|gb|DY619248.1|DY619248
genomic: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACA
EST: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG AGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACA
genomic: TTCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACA
ctcttcttgttgaatatagtagcaggttaattattaacaagtgggtacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACAGTTGTTCCTGGTACTGTTGAATCCATTGGGAAGTTAGTTCAGCAGCTTT
tattaac putative branch site (score: 230)
ttaattattaacaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctttttttttcgaaaaagctcttcttgttgaatatagtagcaggttaattattaacaagtgggtacttgtcagAGCCTTGCTGTTGGCTCAGCTGAGAAGGAAGGCATTTCACGTATTACAACAGTTGTTCCTGGTACTGTTGAATCCATTGGGAAGTTAGTTCAGCAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT