1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtgtaaatgatcaccaatgaaatggtacgttgggatatgtagaatgcaatgatactgactaatgaaattgcgtgcaataatgcagGTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAGAGTACTACGTCGAAGCTGCATGGCCTCTAGGCTCTGCTATTGAGGCTGT
species | Zea mays |
transcript | GRMZM2G006762_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTGTGCATGGACCTTGCCTACCAGTATACTTTGCTAGTAGATGGCTTTG GTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAGEST: gi|37388450|gb|CF631434.1|CF631434
genomic: CCTGTGCATGGACCTTGCCTACCAGTATACTTTGCTAGTAGATGGCTTTGgttagtgtaa ... aataatgcagGTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAG
EST: CCTGTGCATGGACCTTGCCTACCAGTATACTTTGCTAGTAGATGGCTTTG GTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAGEST: gi|37379715|gb|CF626608.1|CF626608
genomic: CCTGTGCATGGACCTTGCCTACCAGTATACTTTGCTAGTAGATGGCTTTGgttagtgtaa ... aataatgcagGTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAG
EST: CCTGTGCATGGACCTTGCCTACCAGTATACTTTGCTAGTAGATGGCTTTG GTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAG
genomic: CCTGTGCATGGACCTTGCCTACCAGTATACTTTGCTAGTAGATGGCTTTGgttagtgtaa ... aataatgcagGTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAG
tgggatatgtagaatgcaatgatactgactaatgaaattgcgtgcaataatgcagGTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAGAGTACTACGTCGAAGCTGCATGGCCTCTAGGCTCTGCTATTGAGGCTGT
taatgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtaaatgatcaccaatgaaatggtacgttgggatatgtagaatgcaatgatactgactaatgaaattgcgtgcaataatgcagGTGTGGAGAGGACCAAGGAGATCACAGTGGTGGACAAGGTGAAGCACGGAGAGTACTACGTCGAAGCTGCATGGCCTCTAGGCTCTGCTATTGAGGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC