1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacaaactaaaccacctctcctcgcattaattccattcggttgataagttcgtccagcaaatatttccttttctgattaagagctatatatatactcgtacgtcggccatatatacggggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACCGGCTGATGTACGAGCTTCGGGCGGCGCTGCAGCAGCACCTGCCGGAGGG
species | Zea mays |
transcript | GRMZM2G006578_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTCGCCGGCAAAGGCGTCCCCATCCGTGGCATCGACGGCCTCAGCTCAG AGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACCEST: gi|148930796|gb|EC873148.2|EC873148
genomic: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAGgtacaaacta ... gggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACC
EST: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAG AGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACCEST: gi|149110645|gb|EE190527.2|EE190527
genomic: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAGgtacaaacta ... gggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACC
EST: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAG AGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACCEST: gi|67040862|gb|CO467117.1|CO467117
genomic: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAGgtacaaacta ... gggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACC
EST: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCTGCTCAC AGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACCEST: gi|148961657|gb|EE012426.2|EE012426
genomic: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAGgtacaaacta ... gggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACC
EST: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAG AGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACC
genomic: TGTCGCCGGCAAAGGCGTCCCCATCGGCGGCATCGACGGCCTCAGCTCAGgtacaaacta ... gggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACC
ctgattaagagctatatatatactcgtacgtcggccatatatacggggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACCGGCTGATGTACGAGCTTCGGGCGGCGCTGCAGCAGCACCTGCCGGAGGG
ttctgat putative branch site (score: 3)
tatatatatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaactaaaccacctctcctcgcattaattccattcggttgataagttcgtccagcaaatatttccttttctgattaagagctatatatatactcgtacgtcggccatatatacggggattccagAGGCGGCGATGTTCGACGTGGAGTACGGGCGGTGGCAGGAGGAGCACTACCGGCTGATGTACGAGCTTCGGGCGGCGCTGCAGCAGCACCTGCCGGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG