1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatatgctgcgtggtgtttgtttaattttgtgttaattattaactatatatcgatcagcttcattctgacgaacatcatggacgcatgcatgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGACGCGGCAGATGGCGCGGTCGCTGCTGGCCGTGTCGGACTACTTCCACC
species | Zea mays |
transcript | GRMZM2G006578_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAA GCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGEST: gi|40302933|gb|CK347320.1|CK347320
genomic: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAAgtaagtaacc ... tgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
EST: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAA GCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGEST: gi|149110644|gb|EE294230.2|EE294230
genomic: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAAgtaagtaacc ... tgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
EST: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAA GCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGEST: gi|76291952|gb|DV031520.1|DV031520
genomic: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAAgtaagtaacc ... tgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
EST: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAA GCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGEST: gi|149032496|gb|EE154927.2|EE154927
genomic: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAAgtaagtaacc ... tgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
EST: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAA GCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGEST: gi|148961656|gb|EE012425.2|EE012425
genomic: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAAgtaagtaacc ... tgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
EST: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAA GCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGEST: gi|67040862|gb|CO467117.1|CO467117
genomic: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAAgtaagtaacc ... tgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
EST: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAA GCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
genomic: TGGCCGTCGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTCAGACAAgtaagtaacc ... tgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACG
atatatcgatcagcttcattctgacgaacatcatggacgcatgcatgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGACGCGGCAGATGGCGCGGTCGCTGCTGGCCGTGTCGGACTACTTCCACC
ttctgac putative branch site (score: 47)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgctgcgtggtgtttgtttaattttgtgttaattattaactatatatcgatcagcttcattctgacgaacatcatggacgcatgcatgacgcacagGCTGAGAACCTTCGGCAGCAGACGCTGCACCGGCTGCACCAGGTCCTGACGACGCGGCAGATGGCGCGGTCGCTGCTGGCCGTGTCGGACTACTTCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT