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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactacatatttgcattcttgttttctttctgttcagttggtgttcatttttattaagatgcccttgctatttttacagGTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTTACAACCTGATAAAGGACTAACATGGCAAATGACTAAACGGCGTGGTGAC

Basic information

species Zea mays
transcript GRMZM2G006507_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 8
gtaagcactacatatttgcattcttgttttctttctgttcagttggtgttcatttttattaagatgcccttgctat--ttttacagGTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTTACAACCTGATAAAGGACTAACATGGCAAATGACTAAACGGCGTGGTGAC
||||| ||| ||| ||||        |  | | |||||| |  | ||||||   ||   |  |||    ||  ||   |||| |||||| ||||| |||||| | ||||||||| | || ||||||||||||||||| |||||||| || ||||| |||||||||||||| |||||||| ||||| 
gtaagaactgcatttttgt-------tcctttatctgttgaccttgtgttccacttgggtgcgattatgtttgtactctttttcagGTATATTGAACTTGTTAGGAAGCATGGGCTAGATATCTCTCAGCCTGGTTTGCAACCTGACAAGGGACTGACATGGCAAATGACAAAACGGCGAGGTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87153082|gb|DY397871.1|DY397871
EST:     ATTTTCATCTGGGATGAGGATCTAGGTGTAGAACATTTCAATGCAGAGAA                         GTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
genomic: ATTTTCATCTGGGATGAGGATCTAGGTGTAGAACATTTCAATGCAGAGAAgtaagcacta ... atttttacagGTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
EST: gi|18964823|gb|BM661216.1|BM661216
EST:     ATTTTCATCTGGGATGAGGATCTAGGTGTAGAACATTTCAATGCAGAGAA                         GTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
genomic: ATTTTCATCTGGGATGAGGATCTAGGTGTAGAACATTTCAATGCAGAGAAgtaagcacta ... atttttacagGTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
EST: gi|31348516|gb|CD432873.1|CD432873
EST:     ATTTTCATCTGGGATGAGGATCTACTTGTAGAACATTTCAATGCAGAGAA                         GTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTCGTTT
genomic: ATTTTCATCTGGGATGAGGATCTAGGTGTAGAACATTTCAATGCAGAGAAgtaagcacta ... atttttacagGTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
EST: gi|22490474|gb|BU050397.1|BU050397
EST:     ATTTTCATCTGGGATGAGGATCTAGGTGTAGAACATTTCAATGCAGAGAA                         GTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
genomic: ATTTTCATCTGGGATGAGGATCTAGGTGTAGAACATTTCAATGCAGAGAAgtaagcacta ... atttttacagGTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctgttcagttggtgttcatttttattaagatgcccttgctatttttacagGTACATTGAGCTTGTTCGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTTACAACCTGATAAAGGACTAACATGGCAAATGACTAAACGGCGTGGTGAC
                                     cccttgctattttt  CT-rich tract
                   ttcatttttattaaga  TA-rich tract