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gtaatgcttatgaactgattggaacatttgcagcactcttgatccatttaatctataagaattaagccttttggggggcatttaagtgaagtagggaacttttctttacgttttgaatgcccttctcatgcaataatggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACGAGGAAAGTAATGAAGGACAACACAAGAGACGTCGTAACAAATCTTCAAA
species | Zea mays |
transcript | GRMZM2G006107_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACGEST: gi|94479119|gb|EB708077.1|EB708077
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
EST: TGGAGAGCTCATTGAACGCATAGATATTGGCTCTATGTCAATAGAAATTG ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATEST: gi|211075041|gb|FL431329.1|FL431329
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGAT
EST: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACGEST: gi|211294918|gb|FL414861.1|FL414861
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
EST: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACGEST: gi|211294917|gb|FL414860.1|FL414860
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
EST: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTG ATNNNNNNNGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
genomic: TGGAGAGCTCATTGAACGCAAAGATATTGGCTCTATGTCAATAGAAATTGgtaatgctta ... ggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACG
agggaacttttctttacgttttgaatgcccttctcatgcaataatggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACGAGGAAAGTAATGAAGGACAACACAAGAGACGTCGTAACAAATCTTCAAA
ttttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcttatgaactgattggaacatttgcagcactcttgatccatttaatctataagaattaagccttttggggggcatttaagtgaagtagggaacttttctttacgttttgaatgcccttctcatgcaataatggtcatacagATAAAAAAAGGGCTGCCAAATCAAAGTTGACAAGGGATATAACTTCTGACGAGGAAAGTAATGAAGGACAACACAAGAGACGTCGTAACAAATCTTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA