1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgttgagctagatctttgtgctatgcagggaagaaaaaggttgtttccgactgacgtctctaaaaacgtgtatgtatgttcattctaatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCTCTTCGCTGATCGACTCAGAGTCGCTCCTCGTGTTCGGAAGGGGTTACAA
species | Zea mays |
transcript | GRMZM2G005849_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAA GCAATGTCAGCGAAGTTCTCAAGCTAGATGEST: gi|211509468|gb|FK960933.1|FK960933
genomic: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAAgtacgttgag ... aatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATG
EST: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAA GCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCTEST: gi|116819317|gb|EC862427.1|EC862427
genomic: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAAgtacgttgag ... aatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCT
EST: TACTCAAGCTAGGAGGGACAGTATCATTAGTGGACTGAACAACCTTTCAA GCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTCGCCTEST: gi|211507116|gb|FK960930.1|FK960930
genomic: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAAgtacgttgag ... aatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCT
EST: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAA GCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCTEST: gi|211507111|gb|FK960925.1|FK960925
genomic: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAAgtacgttgag ... aatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCT
EST: TACTCAAGCTAGGAGGGACAGTATCATTAGTGGACTGAACAACCTTTCAA GCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTCGCCTEST: gi|148955139|gb|EC900656.2|EC900656
genomic: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAAgtacgttgag ... aatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCT
EST: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAA GCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCTEST: gi|47962136|gb|CN844845.1|CN844845
genomic: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAAgtacgttgag ... aatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCT
EST: TACTCAAGCTAGGAGGGACAGTATCATTAGTGGACTGAACAACCTTTCAA GCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTCGCCT
genomic: TACTCAAGCTAGGAGGGACAGTATCATCAGTGGACTGAACAACCTTTCAAgtacgttgag ... aatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCT
tgtttccgactgacgtctctaaaaacgtgtatgtatgttcattctaatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCTCTTCGCTGATCGACTCAGAGTCGCTCCTCGTGTTCGGAAGGGGTTACAA
ttctaat putative branch site (score: 2)
tctaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttgagctagatctttgtgctatgcagggaagaaaaaggttgtttccgactgacgtctctaaaaacgtgtatgtatgttcattctaatggtgcagGCAATGTCAGCGAAGTTCTCAAGCTAGATGCTGGAATGAAGGAGCTTGCCTCTTCGCTGATCGACTCAGAGTCGCTCCTCGTGTTCGGAAGGGGTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC