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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctgtttataaatcattactgtcatagagttatgcaaacaaacttatgtgatgaatcctaacacgacctttgatcctatatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT

Basic information

species Zea mays
transcript GRMZM2G005036_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005036_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g44916.1 (Oryza sativa), 3'ss of exon 7
-------gtatggctgtttataaatcattac---tgtcatagagtta-tgcaaacaaacttatgtgatgaatcctaacacgacctttgatcctatatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT
         |||  | | | | || |||||    | ||| ||  | | |    | | || |  || | |  || |||||  | || |||| || || | ||||||||||||||||||| ||| |    |||||| |||||||||||||||||||  ||  | || |||||||| ||||||||||||||  |||||  ||||
gtaagcttaatgcttctcttttaaccattatgcatatcagagcatcaataagcatataccttggtaaagtgtcttaacatcagctgtgattctgtaccgacagATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761459|gb|DY689465.1|DY689465
EST:     AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGT                         ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgt ... atatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
EST: gi|40333865|gb|CK367935.1|CK367935
EST:     AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGT                         ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgt ... atatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
EST: gi|89758987|gb|DY687957.1|DY687957
EST:     AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGT                         ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgt ... atatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
EST: gi|71438038|gb|DR819088.1|DR819088
EST:     AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGT                         ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgt ... atatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
EST: gi|32863948|gb|CF003630.1|CF003630
EST:     AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGT                         ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgt ... atatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
EST: gi|40336960|gb|CK371030.1|CK371030
EST:     AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGT                         ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgt ... atatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
EST: gi|211246196|gb|FL443898.1|FL443898
EST:     AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGT                         ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgt ... atatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaaacaaacttatgtgatgaatcctaacacgacctttgatcctatatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT
       aaacttat  TA-rich tract