1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tccatttccataatgcgcttggtattctggttaattaccatactcttctgaagtaacacaaaactagtttgtgaatggctggttttttgttgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGCTTGCGCACATAAAAAAG
species | Zea mays |
transcript | GRMZM2G002687_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|6020814|gb|AW065742.1|AW065742
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|91876014|gb|EB405971.1|EB405971
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|211179082|gb|FL345825.1|FL345825
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|71765216|gb|DR963153.1|DR963153
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|148935573|gb|EC879616.2|EC879616
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: CAATAGAGCTCCATAGAAAACTGGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|9953034|gb|BE639617.1|BE639617
genomic: CAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|149010068|gb|EE041875.2|EE041875
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|149108285|gb|EE292625.2|EE292625
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|111192905|gb|EE291041.1|EE291041
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|110520053|gb|EE024360.1|EE024360
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|67030403|gb|CO459152.1|CO459152
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|211149406|gb|FL319865.1|FL319865
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|37373821|gb|CF623233.1|CF623233
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|149073833|gb|EE162155.2|EE162155
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTTTTCCTTGAAGATGATGACGAGEST: gi|60354415|gb|DN221388.1|DN221388
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|113701058|gb|EE678562.1|EE678562
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|5871148|gb|AW017589.1|AW017589
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: AGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|7844633|gb|AW787855.1|AW787855
genomic: AGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|211181701|gb|FL465356.1|FL465356
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGTTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGA-EST: gi|71305907|gb|DR789080.1|DR789080
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGEST: gi|211274585|gb|FL461449.1|FL461449
genomic: GTGGCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
EST: GCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGAT GTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
genomic: GCCAGGACTCAATAGAGCTCCATAGAAAACTTGGCGCTAACCTTGATgtaagccctt ... tgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAG
ttctgaagtaacacaaaactagtttgtgaatggctggttttttgttgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGCTTGCGCACATAAAAAAG
aagtaac putative branch site (score: 369)
ttttttgtt putative PPT
ttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatttccataatgcgcttggtattctggttaattaccatactcttctgaagtaacacaaaactagtttgtgaatggctggttttttgttgcgatgaagGTGGATGTCCCAATCAAATACCTGAACTTCTTCCTTGAAGATGATGACGAGCTTGCGCACATAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - gcgcttg
- - - - - - - - - - - - ttctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctggtt