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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatcaaacaagaaactttaaggcaattgtcaaagataattaattttgtatttcacttttttgttgattactgatgctgccatttgctgtttgtattttttcagGTGCAAGGTTTTCAAAAATCCGAGCATTAGTGATGTCCTGTGCACAACAACAGCAGAGGCTCTTGCAATGGGGAAATTCGTGATCTGCGCAGAACATCCA

Basic information

species Zea mays
transcript GRMZM2G002043_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002043_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g33580.1 (Oryza sativa), 3'ss of exon 6
gtacgtatcaaacaagaaactttaag-gcaattg---tcaaagataattaattttgtatttcacttttttgttgattactgatgctgccatttgctgtttgtatt-ttttcagGTGCAAGGTTTTCAAAAATCCGAGCATTAGTGATGTCCTGTGCACAACAACAGCAGAGGCTCTTGCAATGGGGAAATTCGTGATCTGCGCAGAACATCCA
||| ||||||  |||||||      | ||  |     || |    | || ||  | | | |     ||||| |||| |||||| | ||    |    |||||  |  |||||||| |||||| ||||  || |||||||| |||||||||||||||||| ||||||| || ||||| || |||||||| ||||| |||||||| || ||||||
gtatgtatcactcaagaaaaacagtgtgctctcaggttccatatcatttcatcatctgtgtttaccttttggtgatcactgatccagctgcctttcttttgtgctactttcagGTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAACAGCGGAAGCTCTCGCGATGGGGAAGTTCGTCATCTGCGCGGAGCATCCA

upper sequence: GRMZM2G002043_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA03G36050.1 (Glycine max), 3'ss of exon 6
gtacgtatcaaacaagaaactttaaggcaattgtcaaagataa--ttaattttgtatttcactttttt--gttgattactgatgctgccatttgctgtttgtattttttcagGTGCAAGGTTTTCAAAAATCCGAGCATTAGTGATGTCCTGTGCACAACAACAGCAGAGGCTCTTGCAATGGGGAAATTCGTGATCTGCGCAGAACATCCA
         | ||| ||  ||||       ||  ||     |   | ||| | | ||||   ||| ||  |||   | || ||  || ||     | |   |||| |   |||| ||| || || | |||||| |||||||||||||| || |||||| | ||||| ||||| ||||| ||||| ||||| ||  | || || || ||||||
---------acacatgattctttctcatcctttacatgcccagactcaatctggaatttgtttttattaagtttggttcttattttgacacactttatccttattgt---agGTACAAAGTCTTTATAAATCCTAGCATTAGTGATGTGCTATGCACAGCTACAGCTGAGGCGCTTGCCATGGGCAAATTTGTAGTTTGTGCTGATCATCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcacttttttgttgattactgatgctgccatttgctgtttgtattttttcagGTGCAAGGTTTTCAAAAATCCGAGCATTAGTGATGTCCTGTGCACAACAACAGCAGAGGCTCTTGCAATGGGGAAATTCGTGATCTGCGCAGAACATCCA
                   tactgat  putative branch site (score: 2)
                                            tattttttc  putative PPT
       ttttttgttgatta  TA-rich tract