Sequence
atgc intronic sequence ATGC exonic sequencegtaggttttccctatttcaatgtttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatcccatattcaacattcattgtggcagAGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G000937_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 3'ss of exon 5
----------------------------------gtaggtt-ttccctatttcaatgtttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatcccatattcaacattcattgtggcagAGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
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gtaagttctacttttaagtaaacatattctttatctatgttgttccttaggtaaattttgttgtttt-ctatttgcgcctagttagcttttcttttcaaaattccttaactgctcttat---gtgtacatt-ttcactttgtcagAGAGGAACTGAAGATGTTATGTTTTACCTGTCACGAGAAGCCCAAGATGGAAGAGTAAAGAGTGTCCTCTTCCTTATGCCTTGCCATTCAACACCTTATT
upper sequence: GRMZM2G000937_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 4
------------------gtaggttttccctatttcaatgtttttgt--------attgct--ctatgcatctatggatcacttttgttgctta---tccattatttccatttatcccatattcaacatt-cattgtggcagAGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
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gtaagtactactttaagtaaacatgttctttatgtgtgtgttttgggttaatttggttgctttctatttgtgcctagttaacttttcttttcaagattcctttacttctgttatgtgtatgtgtaccttttcattatgtcagAGAGGAACTGAAGATGCTATGCTTTATCTATCACGAGAAGCCCATGATGGAAGAGTAAAGAGTGTCCTCTTCCTTATGCCTTGCCATTCGACACCTTATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211018072|gb|FL437095.1|FL437095EST: CGTCAT-ACCNAATGTTCCCAGGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGTTATGTATTA-TTGTCAAAAGAAGCCTATGATGGA
genomic: CGTCATAACC-AATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgttgcttatccattatttccatttatcccatattcaacattcattgtggcagAGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
attatttccatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggttttccctatttcaatgtttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatcccatattcaacattcattgtggcagAGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG