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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgaaaagctgaagagagagtggaagtatttgagcatgttaaatccaatattaacacattgtctgttgatcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCAGTCAGGTGGCGTACAATTGACGCACAGGGTTTTTCTTCTATAGACAAA

Basic information

species Zea mays
transcript GRMZM2G000510_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109061|gb|DV527478.1|DV527478
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|31349105|gb|CD433462.1|CD433462
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGAC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGAC
EST: gi|213173050|gb|FM188194.1|FM188194
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|71332542|gb|DR803240.1|DR803240
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|76292714|gb|DV032282.1|DV032282
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|71758598|gb|DR956535.1|DR956535
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|211425383|gb|FL463585.1|FL463585
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|110210924|gb|EC892821.1|EC892821
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|6501109|gb|AW202482.1|AW202482
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|32907582|gb|CF012395.1|CF012395
EST:     GGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: GGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|71758726|gb|DR956663.1|DR956663
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|4886008|gb|AI677128.1|AI677128
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|211234201|gb|FK951229.1|FK951229
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: gi|69351358|gb|DR452107.1|DR452107
EST:     TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG                         GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtatttgagcatgttaaatccaatattaacacattgtctgttgatcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCAGTCAGGTGGCGTACAATTGACGCACAGGGTTTTTCTTCTATAGACAAA
                                              tcttgtc  CT-rich tract
               ttaaatccaatattaa  TA-rich tract