1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgacttcactatttcagtgtcagaagaactgagctatcgtcgctcccccaatgaaactgtatggcagcatacgccgcaaatcctaacccttcgctgactgggaaaatctttgatgcaactcttagGTCGATCTCACAGCAAGGCTATGGCTCCACCAGCTGCTGCATAACGTCATGATGTCAGACAGTGGAGGCGGCCCTCGCCCTGCCCCGGGTCCTGTGATGG
species | Zea mays |
transcript | AC191251.3_FGT005 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATTCAACGGCTTAATCCGAG GTCGATCTCACAGCAAGGCTATGGCTCCACCCAGCTGCTGCATAACGTCAEST: gi|71757155|gb|DR955092.1|DR955092
genomic: CATTCAACGGCTTAAT-CGAGgtgacttcac ... caactcttagGTCGATCTCACAGCAAGGCTATGGCTCCA-CCAGCTGCTGCATAACGTCA
EST: ACTACCTCCCCATCGCGTTGAGGGACGGGACATTCAACGGCTTAATCGAG GTCGATCTCACAGCAAGGCTATGGCTCCCCCAGCTGCTGCATAACGTCATGEST: gi|93014334|gb|EB639854.1|EB639854
genomic: ACTACCTCCCCATCGCGTTGAGGGACGGGACATTCAACGGCTTAATCGAGgtgacttcac ... caactcttagGTCGATCTCACAGCAAGGCTATGGCTCCACCAGCTGCTGCATAACGTCATG
EST: ACTACCTCCCCATCGCGTTGAGGGACGGGACATTCAACGGCTTAATCGAG GTCGATCTCACAGCAAGGCTATGGCTCCACCAGCTGCTGCATAACGTCATG
genomic: ACTACCTCCCCATCGCGTTGAGGGACGGGACATTCAACGGCTTAATCGAGgtgacttcac ... caactcttagGTCGATCTCACAGCAAGGCTATGGCTCCACCAGCTGCTGCATAACGTCATG
acgccgcaaatcctaacccttcgctgactgggaaaatctttgatgcaactcttagGTCGATCTCACAGCAAGGCTATGGCTCCACCAGCTGCTGCATAACGTCATGATGTCAGACAGTGGAGGCGGCCCTCGCCCTGCCCCGGGTCCTGTGATGG
ctctt CT-rich tract
aaaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacttcactatttcagtgtcagaagaactgagctatcgtcgctcccccaatgaaactgtatggcagcatacgccgcaaatcctaacccttcgctgactgggaaaatctttgatgcaactcttagGTCGATCTCACAGCAAGGCTATGGCTCCACCAGCTGCTGCATAACGTCATGATGTCAGACAGTGGAGGCGGCCCTCGCCCTGCCCCGGGTCCTGTGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG