1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttacgaaactgttcagacttcagagtactttccttttgtcctgaacatagcgtgactcatgtttttctattaattgcatttgcatattctattaatgcagGTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT
species | Zea mays |
transcript | GRMZM5G871861_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGT GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCEST: gi|78113561|gb|DV531952.1|DV531952
genomic: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGTgtaagtattt ... attaatgcagGTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCC
EST: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGT GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCEST: gi|71449411|gb|DR830461.1|DR830461
genomic: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGTgtaagtattt ... attaatgcagGTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCC
EST: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGT GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCEST: gi|149001459|gb|EE038760.2|EE038760
genomic: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGTgtaagtattt ... attaatgcagGTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCC
EST: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGT GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCC
genomic: TCAGCAAAATGTGTACAAGCAAGCAGCATTCTGCCTGAACTTTCTATCGTgtaagtattt ... attaatgcagGTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCC
catagcgtgactcatgtttttctattaattgcatttgcatattctattaatgcagGTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT
tattaat putative branch site (score: 2)
ttctatt CT-rich tract
atgtttttctattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacgaaactgttcagacttcagagtactttccttttgtcctgaacatagcgtgactcatgtttttctattaattgcatttgcatattctattaatgcagGTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat