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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttcttcttcatgataagctaagttagtcttcttgtctctggagagtaaagtttcttccaagctgtatgctgacttgtgtctctgactgtgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACATTTCCAGTACCCTTAAAG

Basic information

species Zea mays
transcript GRMZM5G866918_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211293376|gb|FL445066.1|FL445066
EST:     TGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: TGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|32825930|gb|CD965608.1|CD965608
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|15545700|gb|BI643494.1|BI643494
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|67020824|gb|CO449573.1|CO449573
EST:     ATTTTGTTGAGCAAATGCACAG                         AATTCATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: ATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|15590460|gb|BI675076.1|BI675076
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCCCAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
EST: gi|15590461|gb|BI675077.1|BI675077
EST:     GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAG                         AATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT
genomic: GTGCTTGGCCTGTTCTGATTGATGATTTTGTTGAGCAAATGCACAGgtttgttgcc ... tgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaaagtttcttccaagctgtatgctgacttgtgtctctgactgtgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACATTTCCAGTACCCTTAAAG
                                               aattcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttcttcttcatgataagctaagttagtcttcttgtctctggagagtaaagtttcttccaagctgtatgctgacttgtgtctctgactgtgaattctagAATTTATCACTCCACTGACTGCAGCAGTGCGATGGAATCACAGTGTAACATTTCCAGTACCCTTAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA