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gtatggacaattcatagcccttgttggtatcatttctgtgcttgtactctgtaaggttactaaagtttatgtttgttgtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAGACTGAAATCCGAAACTGGTGCTTTCAAATATTTCAAGCTCTGAGTCACA
species | Zea mays |
transcript | GRMZM5G864414_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGTCATAAGAGAGAGTGATACGCTGNTCTTTGTTTT-GAGTACATG GAATGCAGTCTTTATCAGCTGATGAAGAGEST: gi|31350095|gb|CD434452.1|CD434452
genomic: AAGAAGTCATAAGAGAGAGTGATACGCTGTTCTTTGTTTTTGAGTACATGgtatggacaa ... gtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAG
EST: AAGAAGTCATAAGAGAGAGTGATACACTGTTCTTTGTTTTTGAGTACATG GAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAGEST: gi|31353144|gb|CD437501.1|CD437501
genomic: AAGAAGTCATAAGAGAGAGTGATACGCTGTTCTTTGTTTTTGAGTACATGgtatggacaa ... gtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAG
EST: AAGAAGTCATAAGAGAGAGTGATACACTGTTCTTTGTTTTTGAGTACATG GAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAGEST: gi|211272897|gb|FL354598.1|FL354598
genomic: AAGAAGTCATAAGAGAGAGTGATACGCTGTTCTTTGTTTTTGAGTACATGgtatggacaa ... gtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAG
EST: AAGAAGTCATAAGAGAGAGTGATACACTGTTCTTTGTTTTTGAGTACATG GAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAGEST: gi|111991032|gb|EE331915.1|EE331915
genomic: AAGAAGTCATAAGAGAGAGTGATACGCTGTTCTTTGTTTTTGAGTACATGgtatggacaa ... gtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAG
EST: AAGAAGTCATAAGAGAGAGTGATACGCTGTTCTTTGTTTTTGAGTACATG GAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAG
genomic: AAGAAGTCATAAGAGAGAGTGATACGCTGTTCTTTGTTTTTGAGTACATGgtatggacaa ... gtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAG
tttctgtgcttgtactctgtaaggttactaaagtttatgtttgttgtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAGACTGAAATCCGAAACTGGTGCTTTCAAATATTTCAAGCTCTGAGTCACA
tactaaa putative branch site (score: 1)
tttatgtttgttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggacaattcatagcccttgttggtatcatttctgtgcttgtactctgtaaggttactaaagtttatgtttgttgtaattttagGAATGCAGTCTTTATCAGCTGATGAAGAGCAGAGGGAAGCCCTTTTCAGAGACTGAAATCCGAAACTGGTGCTTTCAAATATTTCAAGCTCTGAGTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT