1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacacaatagttaattactcagttttccttgttataaaggatctgtggctgtctctggagggtcttacatttctgccttgccaacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
species | Zea mays |
transcript | GRMZM5G864414_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|13178646|gb|BG349904.1|BG349904
genomic: CTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: AATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|20301126|gb|BQ164069.1|BQ164069
genomic: AATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|111433841|gb|EE298127.1|EE298127
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|71448844|gb|DR829894.1|DR829894
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|60395565|gb|DN228435.1|DN228435
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|18963937|gb|BM660714.1|BM660714
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGCTCCCAGAGEST: gi|71417221|gb|DR803973.1|DR803973
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGCTCCCAGAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|13558780|gb|BG550135.1|BG550135
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAGEST: gi|16378277|gb|BI992368.1|BI992368
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
aggatctgtggctgtctctggagggtcttacatttctgccttgccaacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
gtcttac putative branch site (score: 388)
ttacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaatagttaattactcagttttccttgttataaaggatctgtggctgtctctggagggtcttacatttctgccttgccaacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG