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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaacacgttacattttgagagtgggggaatactacataattaaatgcagtattgtgtcttcctgaaactattttgtgactgctacttctcttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAGAGCCGTGCCGTTCTACAGGGTGGTTGCCCTGCCGGAGGGCCACAGGCAG

Basic information

species Zea mays
transcript GRMZM5G862959_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13126563|gb|BG317133.1|BG317133
EST:     GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGAGGAA-GTCTGATG                         A
genomic: GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG-GTAACATCTTAAGgtgcacatta ... cttttgacag-
EST: gi|13126563|gb|BG317133.1|BG317133
EST:     GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGAGGAA-GTCTGATG                         A
genomic: GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG-GTAACATCTTAAGgtgcacatta ... cttttgacag-
EST: gi|67025991|gb|CO454740.1|CO454740
EST:     GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGAGGAAG-TCTGATG                         A
genomic: GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG-GTAACATCTTAAGgtgcacatta ... cttttgacag-
EST: gi|67025991|gb|CO454740.1|CO454740
EST:     GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGAGGAAG-TCTGATG                         A
genomic: GCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG-GTAACATCTTAAGgtgcacatta ... cttttgacag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagtattgtgtcttcctgaaactattttgtgactgctacttctcttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAGAGCCGTGCCGTTCTACAGGGTGGTTGCCCTGCCGGAGGGCCACAGGCAG
                                  ctgctacttctctttt  CT-rich tract
                    aaactatttt  TA-rich tract