1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcaaatatttttcttgttcttgtcctttttataattttggactgctattcatgggctgatatgcatgctgttcccactttggtatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGCCTCAGAATGAAGCAGCTGTTGCTGGGACACGCTACAATGTGCCTCTGA
species | Zea mays |
transcript | GRMZM5G862538_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAG AGGTTTTAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGEST: gi|32846122|gb|CD985803.1|CD985803
genomic: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAGgtcaaatatt ... tatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTG
EST: ACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAG AGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGEST: gi|19272457|gb|BM888713.1|BM888713
genomic: ACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAGgtcaaatatt ... tatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTG
EST: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAG AGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGEST: gi|33285664|gb|CF075459.1|CF075459
genomic: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAGgtcaaatatt ... tatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTG
EST: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAG AGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGEST: gi|38229577|gb|CF919890.1|CF919890
genomic: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAGgtcaaatatt ... tatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTG
EST: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAG AGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGEST: gi|67027758|gb|CO456507.1|CO456507
genomic: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAGgtcaaatatt ... tatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTG
EST: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAG AGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTG
genomic: GTACCCTCAAATCAAAGCAGTTGAAGACTGAGTTTGATGAATATCTCAAGgtcaaatatt ... tatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTG
tggactgctattcatgggctgatatgcatgctgttcccactttggtatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGCCTCAGAATGAAGCAGCTGTTGCTGGGACACGCTACAATGTGCCTCTGA
ggctgat putative branch site (score: 44)
tattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaatatttttcttgttcttgtcctttttataattttggactgctattcatgggctgatatgcatgctgttcccactttggtatctcacagAGGCCGGAAGGCTCTTCCTTTCTAAGTGTCCTGAAGCAAAATTTGCTGCTGCCTCAGAATGAAGCAGCTGTTGCTGGGACACGCTACAATGTGCCTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT