1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgttcctatatgttttctatatcagaagtttggtcagcaggatcattgaattgttctaatcatatcaattttgtttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGTGGAATGGGTGGAATGGGGGGTGGCCGTGCTGCTCGGAACAGACCAATGC
species | Zea mays |
transcript | GRMZM5G856084_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGA GATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGTEST: gi|148950667|gb|EC896255.2|EC896255
genomic: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGAgtaagtgttc ... tttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGT
EST: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGA GATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGTEST: gi|148955679|gb|EC901358.2|EC901358
genomic: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGAgtaagtgttc ... tttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGT
EST: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGA GATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGTEST: gi|211525859|gb|FL340350.1|FL340350
genomic: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGAgtaagtgttc ... tttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGT
EST: ATGATAAATATGGAGAAGCAGGTCTGAAAGGTGCTGGCATGGGCACAGGA GATTACTCAAACCCGTTTGATCTCTTTGAG-CCCTGTTTGAAGG-TTTGEST: gi|149051735|gb|EE155859.2|EE155859
genomic: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGAgtaagtgttc ... tttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTG
EST: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGA GATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGTEST: gi|211152737|gb|FL348042.1|FL348042
genomic: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGAgtaagtgttc ... tttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGT
EST: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGA GATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGEST: gi|71769003|gb|DR966940.1|DR966940
genomic: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGAgtaagtgttc ... tttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGG
EST: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGA GATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGT
genomic: ATGATAAATATGGAGAAGCAGGTCTGAAGGGTGCTGGCATGGGCACAGGAgtaagtgttc ... tttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGT
tttggtcagcaggatcattgaattgttctaatcatatcaattttgtttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGTGGAATGGGTGGAATGGGGGGTGGCCGTGCTGCTCGGAACAGACCAATGC
ttctaat putative branch site (score: 134)
ttttgtttcct putative PPT
taatcatatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttcctatatgttttctatatcagaagtttggtcagcaggatcattgaattgttctaatcatatcaattttgtttcctacagGATTACTCAAACCCGTTTGATCTCTTTGAGTCCCTGTTTGAAGGGTTTGGTGGAATGGGTGGAATGGGGGGTGGCCGTGCTGCTCGGAACAGACCAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT