1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctaattggggggggggggggggggagggggggacgtggtgtcatgtgttttgcagaaaactgtcactaatcaggcataacctacggttattttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGTCATGGAATGTGATAATGTTCTTAACTCTGGAACAG
species | Zea mays |
transcript | GRMZM5G852877_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGAT GGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGEST: gi|93017381|gb|EB642901.1|EB642901
genomic: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGATgtatggaatc ... ttttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGG
EST: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGAT GGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGEST: gi|89250280|gb|DY622066.1|DY622066
genomic: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGATgtatggaatc ... ttttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGG
EST: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGAT GGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGEST: gi|6527113|gb|AW216323.1|AW216323
genomic: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGATgtatggaatc ... ttttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGG
EST: CAACGTACAGAAGTACTCTTGATTGTTTTACCAAGACATTAAAGAATGAT GGTCCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGEST: gi|60339014|gb|DN205987.1|DN205987
genomic: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGATgtatggaatc ... ttttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGG
EST: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGAT GGACCTGGTGCTTTTTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGEST: gi|101399785|gb|EB821739.1|EB821739
genomic: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGATgtatggaatc ... ttttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGG
EST: CAACGTACAGAAGTATTCTTGACTGTTTTACCAAGACATTAAAGAATGAT GGACCTGGTGCTTTTTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGG
genomic: CAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGATgtatggaatc ... ttttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGG
gtgttttgcagaaaactgtcactaatcaggcataacctacggttattttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGTCATGGAATGTGATAATGTTCTTAACTCTGGAACAG
ttattttct CT-rich tract
ttattttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctaattggggggggggggggggggagggggggacgtggtgtcatgtgttttgcagaaaactgtcactaatcaggcataacctacggttattttctacagGGACCTGGTGCTTTCTACAAGGGATTCATTGCAAACTTTTGTCGGATTGGGTCATGGAATGTGATAATGTTCTTAACTCTGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA