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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttataatgagtcgtaatagtgagtagatgcttttctttctgttgacaaaaatgttcagtagcccatggttattatcatgttagttttgttgtgctcaaaaaatcagctaaggttcctgtttttttgttttatgcattcctttattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAAA

Basic information

species Zea mays
transcript GRMZM5G848205_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G848205_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g55300.4 (Oryza sativa), 3'ss of exon 5
gtttataatgagtcgtaatagtgagtagatgcttttctttctgttgacaaaaatgttcagtagcccatggttattatcatgttagttttgttgtgctcaaaaaat-cagctaaggttcctgtttttttgttttatgcattcctttattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAAA
                                                                                    ||||   ||   ||      | |   | | |||     | ||||  | | |  |   ||      ||| || |||| ||| |        |     ||||  | |  | || |||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| || || ||| |||||||||| || |||| |||||| ||  | || |
------------------------------------------------------------------------------------gtttatatgcattcctttctttcgattgaagtttggtctcttttactctgtaaacctct------cttcctattgcaatcctcacccaaga-----tgttgctgtgttttgtagATGTTAGCAAAACTTGTCAGTGGGATGCACAAACCTGCTCAGCAGACAGTTGTTCCATCATCAGCAGTTCAAGATTTTCTAGTATCACTGCCCATAAAGA

upper sequence: GRMZM5G848205_T04 (Zea mays), 3'ss of exon 3
lower sequence: EFJ06077 (Selaginella moellendorffii), 3'ss of exon 5
gtttataatgagtcgtaatagtgagtagatgcttttctttctgttgacaaaaatgttcagtagcccatggttattatcatgttagttttgttgtgctcaaaaaatcagctaaggttcctgtttttttgttttatgcattcctttattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAAA
                                                                                                                                                     | | | || |  | || |    | |    |  |||   |  |||| ||||| | || || ||    ||||||||||||||||||||||| |||||  | ||||| || ||  | ||| ||   ||||| ||| |  | ||| | |  |
----------------------------------------------------------------------------------------------------------------------------------------------------gtatgttttac-gttttgggggactaa--gtgattccggtcttgtgtagATGCTTGCGAAGCTCTCGAGTGGAATGCACAAGCCTGCTCAACAAACGTTAGTCCCGTCATCGGCGGTTGAATCTTTACTCGCAACCTTGCCTATAAGTA

upper sequence: GRMZM5G848205_T04 (Zea mays), 3'ss of exon 3
lower sequence: EFJ29897 (Selaginella moellendorffii), 3'ss of exon 5
gtttataatgagtcgtaatagtgagtagatgcttttctttctgttgacaaaaatgttcagtagcccatggttattatcatgttagttttgttgtgctcaaaaaatcagctaaggttcctgtttttttgttttatgcattcctttattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAAA
                                                                                                                                                     | | | || |  | || |    | |    |  |||   |  |||| ||||| | || || ||    ||||||||||||||||||||||| |||||  | ||||| || ||| | ||| ||  |||||| ||| |  | ||| | |  |
----------------------------------------------------------------------------------------------------------------------------------------------------gtatgttttac-gttttgggggactaa--gtgattccggtcttgtgtagATGCTTGCGAAGCTCTCGAGTGGAATGCACAAGCCTGCTCAACAAACGTTAGTCCCGTCATCAGCGGTTGAATCCTTACTCGCAACCTTGCCTATAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAAA
                                       ttcttat  CT-rich tract
                     ttagtttt  TA-rich tract