1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtttgctagtgccactgcattttaaatagacctaactaccaattggtagtgcttaactctaacaggattcctttgtatatatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG
species | Zea mays |
transcript | GRMZM5G845755_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|5846756|gb|AI999839.1|AI999839
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATEST: gi|32846294|gb|CD985975.1|CD985975
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTAT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|194717129|gb|FK934282.1|FK934282
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|29945847|gb|CB815850.1|CB815850
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|60350778|gb|DN217751.1|DN217751
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|94476026|gb|EB704984.1|EB704984
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGCCAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|61117730|gb|DN558691.1|DN558691
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|60354727|gb|DN221700.1|DN221700
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|32849734|gb|CD989415.1|CD989415
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATACAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|4609748|gb|AI600587.1|AI600587
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|61117733|gb|DN558694.1|DN558694
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|61117731|gb|DN558692.1|DN558692
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|61117732|gb|DN558693.1|DN558693
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTEST: gi|148990947|gb|EE032376.2|EE032376
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
EST: CCTGGACAAAGTTTATTAATGCAGACAACCAACCCCTAGTGTTTCATGAG GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
genomic: CCTGGACAAAGTTTATTAATGCAGACAACCAACACCTAGTGTCTCATGAGgtgtttgcta ... atatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTT
aactaccaattggtagtgcttaactctaacaggattcctttgtatatatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG
ctctaac putative branch site (score: 2)
tttgtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttgctagtgccactgcattttaaatagacctaactaccaattggtagtgcttaactctaacaggattcctttgtatatatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC