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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcagtctgaagtattgatgttaatgattatgataccttgatcatattggaacttaagtattaatgcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT

Basic information

species Zea mays
transcript GRMZM5G844195_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G844195_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 7
gtttgcagtctgaagtattgatgttaatgattatgataccttgatcatattggaa-cttaagtattaatgcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT
|| |||| |  ||  | ||||        |  ||||| || ||||  || ||||| || ||| |  |||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |
gtctgcaattagatttgttgacaaattataaaatgat-ccatgattctactggaagctgaagaagaaatatattggcagGTGGTTAATTGTAAGGATGAACTTGCACAATTCTACCTGATGGACTGCATAATACAAGTCTTTCCAGACGAATACCATTTACAGACATTGGAAACATTGT

upper sequence: GRMZM5G844195_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA17G37870.1 (Glycine max), 3'ss of exon 8
--------------gtttgcagtctgaagtattgatgttaa-tgattatgataccttgat--catattggaacttaagtatt--aat--gcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT
               ||| |   |  || ||| | | ||   | ||| | |  |||||||   ||| ||   || |  | ||  |||  || |   ||||| || |||||||| ||||| ||||| ||||| || || ||||| ||||||||||| || ||||| || || |||||||| || ||| | || || || |
gtctaataaagtacattttctccccaaaatatagtttttctcttattgtaac-ccttgatgttatactgtctctcagctgtttaaattggcttgaacagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGT

upper sequence: GRMZM5G844195_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA14G40270.1 (Glycine max), 3'ss of exon 7
--------------gtttgcagtctgaagtattgatgttaa-tgattatgataccttgat--catattggaacttaagtatt--aat--gcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT
               ||| |   |  || |||   | ||   | ||| | |  |||||||   ||||||   || |  | ||  |||  || |  |||||| || |||||||| ||||| ||||| ||||| || || ||||| ||||||||||| || |||||||| || |||||||| || ||| | || || || |
gtctaataaagtacattttctccccaaaatataatttttctcttattgtaac-ccttgatgttatattgtctctcagctgtttaaattggcttgagcagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCAGATGAGTACCATTTGCAGACACTTGAGACTTTGT

upper sequence: GRMZM5G844195_T02 (Zea mays), 3'ss of exon 8
lower sequence: AT3G51310.1 (Arabidopsis thaliana), 3'ss of exon 7
------gtttgcagtctgaagtattgatgttaatgattatgataccttgatcatattgg-aacttaagtatta--atgcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT
       ||| |  || |      |  | | |      |   | || |   ||| |||  ||||   || | |  |||  ||   |||| || || ||||||||||| |||||||| | |||||| ||||| ||||| || ||||||||||| || || |  ||  | |||||  | ||    ||||
gtctggtttttctctccgtttagatagtttcagcatccaaccttccgtctacatGTTGTCAACTATTGTCTCACTATGTCTTAAAAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgattatgataccttgatcatattggaacttaagtattaatgcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT
                                      tattaat  putative branch site (score: 2)
                              aacttaagtattaat  TA-rich tract