1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatactctactgattgtagttcgccaaaaatttcttggcacttgacgtgctttgttcttgatggggtcccattgtaatactttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTACTTGTTAAG
species | Zea mays |
transcript | GRMZM5G843914_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT GCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTAEST: gi|74241581|gb|DT649495.1|DT649495
genomic: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactct ... actttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
EST: GGTCAACATACACAATGCTTTGCTGATGCAT GCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTAEST: gi|71431421|gb|DR812471.1|DR812471
genomic: GGTCAACATACACAATGCTTTGCTGATGCATgtaatactct ... actttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
EST: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT GCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTAEST: gi|88756881|gb|DY541022.1|DY541022
genomic: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactct ... actttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
EST: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT GCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTAEST: gi|78123668|gb|DV542052.1|DV542052
genomic: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactct ... actttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
EST: AAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT GCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTAEST: gi|101391015|gb|EB817443.1|EB817443
genomic: AAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactct ... actttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
EST: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT GCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTAEST: gi|211041651|gb|FL024100.1|FL024100
genomic: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactct ... actttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
EST: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCAT GCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
genomic: AAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactct ... actttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTA
cttggcacttgacgtgctttgttcttgatggggtcccattgtaatactttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTACTTGTTAAG
tcttgat putative branch site (score: 4)
tactttc putative PPT
attgtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactctactgattgtagttcgccaaaaatttcttggcacttgacgtgctttgttcttgatggggtcccattgtaatactttcacagGCTTATCTGAAGAATGGCGTCCCACAGAACAATCTAAAGAAAACATCCCTACTTGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA